Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2142 ATGTTCTCTCTTTCTCTCTTCGGTGCGGTGGTAGTTGGACCTACAGTTTCTGAAAAAGATGGCCTTCCAACAACATCATCATCAACACCTACATTTTCTGCTTCATTTGTTGTTGTTGCGACCTGGTCATACAGACAAGACAATATCTACGACCCATCACACGCTTATTTGTTTCGAAGTTTGAGTCTTTTTGCATTTTGGCTTCAGTTTTGCTTCTCTTGTCTCAGGGAGAGAAAAGTACACTGCTTAGTTCATAAGAGATATTTAAGAGTAGTAGTGATTTTTTGCCTTCCTAAGATATGCATCTTCCAAAGAGTTTCAAGCATGAAATTGTTCTCATCTTGTGTTGATGCATTGAGAGCCATTAAGCGTAGTTTGATTGATACTAATGGAAATTTGAGCAATTGGGATCGTGGAGACCCATGTACATCAAGGTGGAAAGGAGTTTTGTGCTTCAATGAAACAAAAGAGGATGGCCTTCTACATGTTGAGGAATTGCAATTACTGAGATTGAACTTGAACGGAACTTTGGCACCAGAACTTGGCAAATTAGCTTACATGAAAAGATTGAACTTTATGTGGAACAACATAAGTGGGAGTATTCCTAAGGAAGTTGGCAATATCAAATCTTTGGAACTCTTGCTTCTGAATGGAAATCAATTAACAGGTCCACTACCAGAGGAGATTGGCAATCTTCCAATCCTTGATAGAATACAAATTGATCAGAATCATATATCAGGACCTATACCTAAGTCATTTGCAAACCTGAGCACGACAAAGCACTTTCACATGAACAATAATTCACTTAGCGGACAAATCCCACCAGAGCTTTCCCGATTACCAAAGCTTGTTCACCTTCAACTTGATAACAATAACTTCGAGGGAAATAGCATTCCTGATACGTATGCCAACATGTCAAAGTTGTTGAAGATGAGCCTTAGGAATTGCAACCTGAGAGGACCAATTCCTGATTTAAGCAGGATACCTTACCTTCTTTATCTTGACCTCAGTTTGAATCAGTTGAATGAATCGATTCCTCCCAATAGGCTTTCTGAAAATATCACAACCATTGATTTATCAAACAACAACCTTACTGGAAATATTCCATCCTACTTTGCTGATCTTCCACGTCTTCAGAAATTGTCAATCGCAAACAATTCATTGAATGGCAGTGTTTCTTCCTCCATTTGGCAGGACAAGACTTCAAATGGAACAGAAAAATTTGTCGTGGAGTTGGAAAATAATCAACTTACAACCATATCAGGCAGTATTGATCTTCCTCCAAATGTCACAGTCGGGCTTGGTGGAAATCCCCTTTGCTCAAATACAACCCTGATTCAGTTTTGTGGTTCTGAAGGTACTATTCCAACAAATGGCATAGTAACAACAAATTCCAGTTCCTGTCCACCTCAAGGATGCCCTCCTCCTTATGAATACACTCTCAATTGTTTCTGTGCACTTCCATTGATTGTTTTCTATCGGTTGAAAAGTCCCGGATTTTCGAACTTTCTTCCATACGTGACTGGATTCAAGGACTACATGACTCATGGTCTTGAAATATCTTTTGATCAGCTAGAATATGAGTTTTTTTGGCAAGTAGGACCTCGAGTGAGAATGGATTTGAAGTTTTTTCCTCCATATGTCAGTAACACTAGCAATCATACTTTCAATGATAGTGAGCTCCTACGGATCACAAGCAAGTTCACAGGATGGCTAATTCCAGACAATGATACTTTTGGGCCTTATGAACTTATTGGCTTCAATCTTTTGGGCTCTTACCAGGATGTGATTCCAAAGAGTTCATCAAAATCAGGGATAAGTACGGGCGCGCTGATTGGCATAGTCATAGGGGCAATTGCTGCTGCAGTGACATTATCTGCAATTGTTACCATTCTTATATTGAGAATAAAATTGAAAGATTATCATGCTGTTTCCAAGCGACGCCGTGCATCTAGGATCTCTATAAAAATTGATGGTGTAAGGGCCTTTACTTACGAAGAACTGTCGTCGGCCACAAACAATTTCAGCAGCTCTGCTCAAGTTGGACAAGGGGGCTATGGGAAGGTTTATAAAGGGATTCTTTCTGATGGCACAGCTGTTGCCATAAAGCGTGCACAAGAGGGATCCCTGCAAGGTGAGAAGGAGTTCCTTACAGAAATATCATTACTATCAAGGTTACATCATCGCAACCTCGTGTCTCTTCTTGGATACTGTGATGAAGAAGGTGAACAAATGCTGGTTAACGTTGCGTACCAATCCGGGGTGATATTTTCGATAATCGACGGAAGAATGGGGTCATATCCATCAGAGAATGTGGAGAAATTTTTAACATTGGCACTGAAGTGTTGTGAAGACGAGCCAGAGGCACGGCCTAGAATGGCAGAAGTGGTTAGAGAGCTTGAAAACATATGGTCTACAATGCCGGAATCAGATACAAAGAGAGCTGAATTTATATCAAGTGATTCTGGGAAAGGAATCAGTGACAGTCACAGTACACCATCTTCATCTTCTGTTATGAAGACTCCTTTTGTATCAGGAGATGTGTCAGGCAGTGACCTTGTTAGTGGAGTCATACCAAGCATCAAGCCAAGATAG 2595 0.4046 MFSLSLFGAVVVGPTVSEKDGLPTTSSSTPTFSASFVVVATWSYRQDNIYDPSHAYLFRSLSLFAFWLQFCFSCLRERKVHCLVHKRYLRVVVIFCLPKICIFQRVSSMKLFSSCVDALRAIKRSLIDTNGNLSNWDRGDPCTSRWKGVLCFNETKEDGLLHVEELQLLRLNLNGTLAPELGKLAYMKRLNFMWNNISGSIPKEVGNIKSLELLLLNGNQLTGPLPEEIGNLPILDRIQIDQNHISGPIPKSFANLSTTKHFHMNNNSLSGQIPPELSRLPKLVHLQLDNNNFEGNSIPDTYANMSKLLKMSLRNCNLRGPIPDLSRIPYLLYLDLSLNQLNESIPPNRLSENITTIDLSNNNLTGNIPSYFADLPRLQKLSIANNSLNGSVSSSIWQDKTSNGTEKFVVELENNQLTTISGSIDLPPNVTVGLGGNPLCSNTTLIQFCGSEGTIPTNGIVTTNSSSCPPQGCPPPYEYTLNCFCALPLIVFYRLKSPGFSNFLPYVTGFKDYMTHGLEISFDQLEYEFFWQVGPRVRMDLKFFPPYVSNTSNHTFNDSELLRITSKFTGWLIPDNDTFGPYELIGFNLLGSYQDVIPKSSSKSGISTGALIGIVIGAIAAAVTLSAIVTILILRIKLKDYHAVSKRRRASRISIKIDGVRAFTYEELSSATNNFSSSAQVGQGGYGKVYKGILSDGTAVAIKRAQEGSLQGEKEFLTEISLLSRLHHRNLVSLLGYCDEEGEQMLVNVAYQSGVIFSIIDGRMGSYPSENVEKFLTLALKCCEDEPEARPRMAEVVRELENIWSTMPESDTKRAEFISSDSGKGISDSHSTPSSSSVMKTPFVSGDVSGSDLVSGVIPSIKPR 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2142 864 ProSitePatterns Protein kinases ATP-binding region signature. 681 703 IPR017441 GO:0005524
Aed4g2142 864 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 98 747 - -
Aed4g2142 864 SMART tyrkin_6 675 800 IPR020635 GO:0004713|GO:0006468
Aed4g2142 864 ProSiteProfiles Protein kinase domain profile. 675 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g2142 864 Pfam Protein kinase domain 677 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g2142 864 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 747 835 - -
Aed4g2142 864 Gene3D Ribonuclease Inhibitor 115 267 IPR032675 -
Aed4g2142 864 Pfam Leucine rich repeat N-terminal domain 116 151 IPR013210 -
Aed4g2142 864 Gene3D Ribonuclease Inhibitor 268 347 IPR032675 -
Aed4g2142 864 MobiDBLite consensus disorder prediction 822 844 - -
Aed4g2142 864 Gene3D Phosphorylase Kinase; domain 1 645 749 - -
Aed4g2142 864 Gene3D Ribonuclease Inhibitor 348 471 IPR032675 -
Aed4g2142 864 MobiDBLite consensus disorder prediction 811 864 - -
Aed4g2142 864 Pfam Leucine rich repeat 235 293 IPR001611 GO:0005515
Aed4g2142 864 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 747 835 - -
Aed4g2142 864 SUPERFAMILY L domain-like 114 396 - -
Aed4g2142 864 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 98 747 - -
Aed4g2142 864 SUPERFAMILY Protein kinase-like (PK-like) 651 747 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2142 Aed-Chr4 24261650 24270042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2142 747 813 Receptor kinase-like Gene Family AT5G01950 47.761 1.37e-12 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Aed4g2142 Pkinase 7e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2142 - - gmx:100799888 1052.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2142 4 24261650 24270042 Aed4g2142 4 24261650 24270042 ECH
Aed4g2142 4 24261650 24270042 Aed3g1959 3 23756547 23766053 PCT
Aed3g1960 3 23766640 23776038 Aed4g2142 4 24261650 24270042 PCT