Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2141 TTTTATCCTCTTGTTTGTTCAGGACCGGCGCGGTGTTACCGGCAGATAAAGAACAAGCCGTACCCGAAATCCCGTTTCTGCCGCGGCGTCCCGGAGCCGAAGATCCGAATCTACGACGTGGGGATGAAGAAGAAGGGAGTGGATGAGTTTCCGTTCTGCGTGCACCTGGTCTCGTGGGAGAAGGAGAACGTCTCCAGCGAGGCCTTGGAAGCGGCGCGCATCGCCTGCAACAAGTACATGGCCAGGTTCGCGGGGAAGGATGCCTTCCACCTCCGCGTCAGGGTGCACCCCTTCCACGTGCTTCGGATCAACAAGATGCTATCGTGCGCCGGCGCCGACAGGCTCCAGACTGGCATGAGAGGCGCCTTTGGTAAGCCCCTGGGGACGTGCGCCAGGGTCAGCATTGGCCAGGTTCTGCTCTCTGTCAGGTGTAAGGATGCTAACAGTCATCATGCTCACGAGGCTCTTCGCCGCGCCAAGTTCAAGTTCCCCGGCCGCCAGAAAATCATCGTCAGCAGAAAATGGGGATTTACAAAGCTCAGTCGAAGTGAGTATTTGAAGTTGAAGTCGGAGAACAGAATTGTGCCGGATGGGGTCAATGCCAAGGTTCTTGGGTGTCACGGACCTTTGGCAAATCGTGAGCCTGGAAGAGCTTTCTTACCAGCTACTGCTTAG 675 0.5659 FYPLVCSGPARCYRQIKNKPYPKSRFCRGVPEPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMARFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPLGTCARVSIGQVLLSVRCKDANSHHAHEALRRAKFKFPGRQKIIVSRKWGFTKLSRSEYLKLKSENRIVPDGVNAKVLGCHGPLANREPGRAFLPATA 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2141 224 CDD Ribosomal_L16_L10e 45 170 IPR016180 GO:0003735|GO:0005840|GO:0006412
Aed4g2141 224 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 8 223 - -
Aed4g2141 224 ProSitePatterns Ribosomal protein L10e signature. 112 133 IPR018255 GO:0003735|GO:0005840|GO:0006412
Aed4g2141 224 Gene3D Ribosomal protein L10e/L16 6 219 IPR036920 GO:0003735|GO:0005840|GO:0006412
Aed4g2141 224 TIGRFAM uL16_euk_arch: ribosomal protein uL16 8 178 IPR001197 GO:0003735|GO:0005840|GO:0006412
Aed4g2141 224 Pfam Ribosomal protein L16p/L10e 16 170 IPR016180 GO:0003735|GO:0005840|GO:0006412
Aed4g2141 224 SUPERFAMILY Ribosomal protein L16p/L10e 9 177 IPR036920 GO:0003735|GO:0005840|GO:0006412
Aed4g2141 224 PANTHER 60S RIBOSOMAL PROTEIN L10 8 223 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2141 Aed-Chr4 24259071 24260883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2141 9 224 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 85.648 1.07e-139 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2141 K02866 - gmx:100779884 437.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2141 4 24259071 24260883 Aed4g2141 4 24259071 24260883 ECH