Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2125 ATGGAGACCATGAGCTCCGTTCTCAAGTGTTGGATGCTCATATGTTTGTTACTGTCATTTCAGCAATGCTTTGGGTTTTCAGAGTTTCGGCCTTATCAGAGAGAAGTTATTGAGAAAATTATCGAGAAAAGGGATTGTTTGGTACCTCCTTTGGTTGTTAAAAAGACTGGGATAGTTGTAAGCCCTCTGATATCATTGATGCAAGACCAGGTGATGGCTTTGAAACAAAGGGGCATCAAAGCTGAATTTCTTGGAAGTGCTCAGAAGGATTTCTCTGTGCACTCTAAAGCTGAACATGGTCAATTTGACATTCTGTTCATGACTCCTGAGAAGGCATGCACAGTTCCTAGCAGTTTCTGGTCCAACTTACTAAAGGCTGGAATTAGTCTTTTTGCCGTTGATGAAGCCCATTGCATATCAGAATGGGGACATGATTTTAGGGTGGAATACAAGCATTTAGACAAATTACGTGAGGTTTTGCCAGATGTTCCTTTTGTTGGTCTAACTGCGACTGCTACCGAAAAGGTACAATATGACATCACCAGTTCCCTAAAGCTGAATAATCCTTATGTTACGGTTGGTTCATTTGATCGCCCAAATCTTTTCTATGGTGTCAAACTGTTGAACCGTGGACAATCTTTTATCGATGAACTTGTGCAAGAAATTTCAAAAGGAGTCACTAATGGTGGTTCAACTATAATTTATTGCACAACAATCAAAGATGTAGAGCAGATATTCAAGTCATTTGCAGAAGCAGGCATTGAGGCAGGCATGTACCATGGCCAAATGAATGGAAAAGCTCGAGAGGAGTCTCATAGATTATTTGTTAGAGATGAACTGCAAGTCATGGTGGCCACCATCGCTTTTGGCATGGGCATAGATAAACCTAACATAAGACAAGTGATTCACTATGGTTGCCCTAAGAGTCTAGAGTCCTACTACCAGGAAAGTGGACGATGTGGTAGAGATGGTATAGCTTCTGTTTGTTGGCTTTACTACACAAGAAGTGACTTTGCAAAGGGCGACTTTTATTGTGGAGATGTGAAATCAGTATGTGTATTTGTATTTATCAGAAAAAACATTGAAGTTGCTGACTTCTTGCATATTTTCCCCAGACAAGTTATCCCTGTTCTCTTAGTAACACTTGAGTCTCCAATGTACCAGAAAAAACAAAGAAAAGCTATTATGGAGTCGTTGCTGGCTGCTGAACACTATTGTGTGCTGACAACTTGCAGAAGAAAGGGAAGATGGGGCCTTAATATGCCCATTGATGTCTTGCGCGGGTCTCGAGCCAAGAAAATTCTTGATGTTCAGTTTGACAAGCTTCCACTTCATGGACTGGGGAAAAATTATCCAGCAAATTGGTGGAAAGCACTTGGACATCAATTGATTTCTCAAGGTTATTTGAAGGAGACTGTTAGTGACATATACAGAACTTTAAGTGTCAGTTCAAAAGGAGAGCAATTTTTGGCCTCTTCTAGTCCAGATTATCAACCTCCCTTGGTTTTGACATTGACTGCTGAAATGCTTGGAGAAGAAGATAATGGAAACACACAAGAAGAATTCAAAACTTTATCCACTTCAGAATCAGAAGGTTTTTCAGAGGCTGAGGGACAGCTCTACCAAATGCTTTTGGAAGAAAGATTAAAGCTTGCAAGAAGTGTTGGAACAGCTCCATATGCTATATGTGGTGATCAAACGATCAAGAAAATTGCTTTGACAAGACCATCTACAAAAGCAAGACTGGCCAACATTGATGGTGTGAATCAGCACCTAGTAACGAAATATGGAGATTATTTTCTTCAAGTCATTCAGAAACTGTCTCAAGGATTAAACCTATCATTGGATGGGGAAGCAAGGGTCGCAACAACAAGTTTGCAAACTAATGAAGTAAAGAGAGTATCTTCACTAACCAACAAATCCCACAAGTTGACACCAGCAAAGTTTGAAGCATGGAAAATGTGGCATGAAGATGGTTGTTCTATTCATGAGATTGCTAATTTTCCAGGTAGAGCAGCTCCTATAAAAGAACAAACTGTTGCTGAATATCTGCTGGAAGCTGCTCAAGAAGGATTATCCTTTGATTGGGCTAGATTCAGCGAGATGATAGGACTGACACAAAAGATCATATCAGAAATTCAGGGCGCCATTTCAAAAGTTGGATCTACAGATAAGCTGAAACCTATAAAAAATGAATTGCCAGAAGAGATAAGTTATCAGCACATCAAGACTTATTTGACAATGCAAAACTGTGGAATATCCTTAGAAGCAATTCAATCTGGAAGTAACCAGACTGAGAAAGATGATGAACTTGCACACAATGCTTCAAATTTGTCAGATCCTACTTTAGAAACTTGCCATGTGGAAAGGCATTGTGAAGACGACATCTCTGCTAAAAGCTCAACAGAAAAATGCGACTTAGAAATTGATGAGGTACCTACTCTACCTGTCAATGGTTCTGAGGAATTCACAAACAAAAGACAAAAAGTCAGTGAAACAAAGGAAGTAAATTCAACTAAATTGAAGGCTACAGAGAGTTCTGTTGTAGAGTGGTTGAAGAACTTTGATGAAGGGGCTACATTGAGCGATGTTTTGGAACACTTCAATGGATCCAGTGAAGATTCGTTGGTTGAACTGCTAAATTGCCTTCAGTGTGACTTTTCAATATATAGGAAAGGTAGCATGTATAGGGTTATGTAA 2700 0.3959 METMSSVLKCWMLICLLLSFQQCFGFSEFRPYQREVIEKIIEKRDCLVPPLVVKKTGIVVSPLISLMQDQVMALKQRGIKAEFLGSAQKDFSVHSKAEHGQFDILFMTPEKACTVPSSFWSNLLKAGISLFAVDEAHCISEWGHDFRVEYKHLDKLREVLPDVPFVGLTATATEKVQYDITSSLKLNNPYVTVGSFDRPNLFYGVKLLNRGQSFIDELVQEISKGVTNGGSTIIYCTTIKDVEQIFKSFAEAGIEAGMYHGQMNGKAREESHRLFVRDELQVMVATIAFGMGIDKPNIRQVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYCGDVKSVCVFVFIRKNIEVADFLHIFPRQVIPVLLVTLESPMYQKKQRKAIMESLLAAEHYCVLTTCRRKGRWGLNMPIDVLRGSRAKKILDVQFDKLPLHGLGKNYPANWWKALGHQLISQGYLKETVSDIYRTLSVSSKGEQFLASSSPDYQPPLVLTLTAEMLGEEDNGNTQEEFKTLSTSESEGFSEAEGQLYQMLLEERLKLARSVGTAPYAICGDQTIKKIALTRPSTKARLANIDGVNQHLVTKYGDYFLQVIQKLSQGLNLSLDGEARVATTSLQTNEVKRVSSLTNKSHKLTPAKFEAWKMWHEDGCSIHEIANFPGRAAPIKEQTVAEYLLEAAQEGLSFDWARFSEMIGLTQKIISEIQGAISKVGSTDKLKPIKNELPEEISYQHIKTYLTMQNCGISLEAIQSGSNQTEKDDELAHNASNLSDPTLETCHVERHCEDDISAKSSTEKCDLEIDEVPTLPVNGSEEFTNKRQKVSETKEVNSTKLKATESSVVEWLKNFDEGATLSDVLEHFNGSSEDSLVELLNCLQCDFSIYRKGSMYRVM 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2125 899 Gene3D - 198 415 IPR027417 -
Aed4g2125 899 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 20 339 IPR004589 GO:0004386|GO:0006310
Aed4g2125 899 Gene3D HRDC domain 532 613 IPR044876 -
Aed4g2125 899 CDD SF2_C_RecQ 198 333 - -
Aed4g2125 899 Gene3D - 16 196 IPR027417 -
Aed4g2125 899 MobiDBLite consensus disorder prediction 514 533 - -
Aed4g2125 899 Pfam RQC domain 406 491 IPR018982 GO:0006260|GO:0006281|GO:0043138
Aed4g2125 899 ProSiteProfiles HRDC domain profile. 534 614 IPR002121 GO:0003676
Aed4g2125 899 SMART ultradead3 25 206 IPR014001 -
Aed4g2125 899 SUPERFAMILY "Winged helix" DNA-binding domain 412 492 IPR036390 -
Aed4g2125 899 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 338 IPR027417 -
Aed4g2125 899 Pfam HRDC domain 539 604 IPR002121 GO:0003676
Aed4g2125 899 SMART helicmild6 243 324 IPR001650 -
Aed4g2125 899 PANTHER WERNER SYNDROME ATP-DEPENDENT HELICASE 20 739 - -
Aed4g2125 899 SUPERFAMILY HRDC-like 533 609 IPR010997 GO:0000166|GO:0044237
Aed4g2125 899 Gene3D - 416 498 IPR036388 -
Aed4g2125 899 SMART RQC_2 406 502 IPR018982 GO:0006260|GO:0006281|GO:0043138
Aed4g2125 899 Pfam DEAD/DEAH box helicase 40 176 IPR011545 GO:0003676|GO:0005524
Aed4g2125 899 Pfam Helicase conserved C-terminal domain 217 323 IPR001650 -
Aed4g2125 899 Pfam Helix-turn-helix domain 650 746 IPR029491 -
Aed4g2125 899 SMART hrdc7 534 614 IPR002121 GO:0003676
Aed4g2125 899 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 190 IPR014001 -
Aed4g2125 899 CDD DEXHc_RecQ 20 197 - -
Aed4g2125 899 PANTHER DNA HELICASE RECQ FAMILY MEMBER 20 739 - -
Aed4g2125 899 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 214 383 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2125 Aed-Chr4 24166308 24175123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2125 233 340 Eukaryotic Initiation Factors Gene Family AT3G19760 27.778 1.52e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2125 K03654 - gmx:100797777 1515.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2125 4 24166308 24175123 Aed4g2125 4 24166308 24175123 ECH