LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed4g2112	ATGCCAGGGACCCAGAAGAAGAAGCCGCCGGGAATTGAACCGCCGGACGACCTCCGTTGCCGTCGCAGCGACGGAGCCTCGTGGCGGTGCAAACACTGGCGGATTCATGACCAGAGTTACTGCGAGGATCACTTCCTTACAATTACCATCCGAGCCAGGTCCTCCGAACCAAGGAATAAGAAGAAGAATAAACAACAACCTAGGGCTTCTACTTCTTCTGCTTCTGCTTCGGCGCGAAGAGACAATGCGAATAAGAATTCGAAGAAGAGGCTTCGAGACCGAGAACGAGACGAAGAAGAGACTACTGTTCCGGAGAAAGCAAAACACAAGAAGGTGAAACTCGAAGCGGAACCAGCATTACCGGACAGGAAAGCCAGGAGCAGAGAGAAGATCAAGCAAATGCTTATGCAATTGGACGATGATTTTGAAATCGACGACAAAAAATCGGTCAAAACGACGAGGACAACAAAGTTGATGCCTTCTTCTTCCGCCAAGTCTAGCGGCGCGAAGACGAAAGCCTCTGTTTATGAGTCTCAGATGTGTCACCAGTGCCAGAAAAGTGATAGGACTGTTGCTCGCTGTCGGAACTGTGCAAAACGATTTTGCGTCATTTGCATTCAGAGATGGTATTCACAAATGTCCAAGAAGGAAATAGAAGAATCCTGTCCATATTGTCAAGGCAATTGTAATTGCAAGGCATGTTTACGTAGAAAAGATGTAAATGCTGATTCTGGAGATTTAGGAGTGCCTCAAAATGAAGATGAAAAGATTCGACATCGGAAGCATTTGGTGCGAGCTTTGTATCCTTTTCTGGAACAACTTAATCATGAGCAGCAGTTGGAATTGGAGATGGAAGCAAAAATTAAAGGGTTATTGCTTTCTGATGTACAAGTTAAGAGAATTGTTTGTTCTGAATATGAGCGCATTTATTGGTTAGTTTCTTTCCAAAATTATTTTATTGTACTTATCATGAATTGCTGTTTTTTACCTCATTGTCAATTACCCAATGCTATTGGCTATCACTGCAGCAACAATTGCAAAACCTCTATTATTGATTTTCATAGGAGCTGCCCAAATTGTTCGTATGATCTTTGCCTTACTTGTTGCCGGGAAATTCGTGGCAATTTCTTGCCAGGGGGAATAGTTGAGCCGTGTATTGATGTTTCTAATGCTCATTCACATAGTGCAGAGCATTTAGATCCGCACTCATGTAAAAAAGAATCATCAGACATTTGTCTTGAATTGAGCTCTGTTAGACCAAATCATTTGTGGAGGGCTATGAAAAATGGTGCAATCCCCTGTCCTCCAGAGGATAATGGTGGTTGTGGGTATGAATGTCTTGAGCTGAAGTGTATATTACATCAAAGTTGGATTTCAGAGTTAAGGGAAAAAGTGAAAAGATTAATTGAAGTACATGGACTAGAAGATATGCCCACAGTTTCTGCACGGTGTAATTCCTGCTTCAAATCCCATGATGAAATTGACTCCATCAATGAGAAGTTGCGAAGAGCTGCCACTCGAGAAGGCTCTAATGACAACTATTTGTATTGTCCTTCCGCTAGTGATGTTGAATGTGGGGATCTGGAACATTTTCAGGGCCATTGGATTAAGGGAGAACCGATTATTGTTAGGAATACTCTTGAGTTAACTTCTGGCTTGAGCTGGGAACCAATGGTAATGTGGCGTGCAATGCGTGAACTGACATGTCATGGTTCCAAACATTTGAATGTGAGAGCAATTGATTGCCTAGATTGGTGTGAGGTTGAAATAAATATCCATCAATTTTTCAAGGGATACTCAGAGGGTCGTGCTCATCGTGACGCCTGGCCTGAGATGCTCAAGCTCAAAGATTGGCCTCCGTCTAATCTATTTGAGCAGAGGTTACCACGTCATGGTATGGAGTTTATTAGGGCCTTACCTTACAAAGAGTATACACATCCTCACACTGGTTTTCTTAACATGGCCACAAAGCTACCGGAAGAGTCTTTGAAACCTGACTTGGGGCCAAAGACGTATATAGCATATGGCTTTGCTGAAGAGCTTGGACAGGGAGATTCTGTAACCAAGCTTCATTGTGACATGTCAGATGCGGTAAATATTTTGACGCATACGGAAGAGGTGACACTCACTTCTCAACATCTTAACAGAATAGAGACGTTGAAACAAAAATATGCCGTAGAAGATGACCTAAGTGAACTTTTTAAGCTTTTGCAGAATGATTCTGTAGTGAAGTGCAAATCAACATTAGAAGAAAATATTTCATTGCAGGTAGCAGATGATTTGTCACTTCTTAATGGGTCTTCTCTTACCCAAATGTCAAAAATGGAAAATGATGGGCCCTGCAGAAAGCATGCAACTGCTAAACCACCAAATGATAGCATTCTTGAAAAGAATGGTAAGGCTGTGGCTTCTGATGGAGAACCAAGTTCTTCTACACCCAGAGTTGAAGTTCTAGTGAATTCAGGGACTTCATTGGAAAGGGAAACTAGTGAAACGATAAACTCTGAAGAAGGGAATGTAATTATTGAGAGGGAAATTGTATTCAAATCACCGTGTGATTTAGATATGAAGTCAGAATTATATGACGTGAAAAAATCTAATGCTGTTTTTTCCAACATGCATACTTCAACGAATGAGGTGCTGCAGCAAACTGCTGGATGTATTAGTCAATCTCTTGACTCTGGAAATATGCATAGTGGACAAAAATTTGCCAAGGGAGGTGCTGTCTGGGATATTTTTCGGAGGCAAGATGTGAGCAAGCTTGAAGAATACCTGAGGAAGCATTGTAGAGAATTCAGGCATCTCCGTGGTTCTCAAGTGGAGGAGGTTTTTCACCCCATTCATGATCAAGTTTTTTATCTGACTTCTCATCATAAAAGGAAGCTCAAGGAAGAATTTGGAGTTGAACCTTGGACTTTTATACAAAACCTTGGGGAGGCTGTTTTTATACCTGCCGGGTGTCCCCATCAAGTTAGAAACTTAAAGTCGTGCATAAAGGTGGCTCTTGATTTTGTCTCTCCTGAAAATATTCAAGAGTGTATCCGTCTGACCGAGGAATTCCGTACTCTTCCTCCAAGCCATAAAGCAAACGAAGATAAACTTGGGGTGAAAAAAATGTGTCTCTATGCATTAAGCGAGGCTGCAGACTCTTTGGTGCAGCACAGCTCAAAGGATGATTAG	3180	0.4204	MPGTQKKKPPGIEPPDDLRCRRSDGASWRCKHWRIHDQSYCEDHFLTITIRARSSEPRNKKKNKQQPRASTSSASASARRDNANKNSKKRLRDRERDEEETTVPEKAKHKKVKLEAEPALPDRKARSREKIKQMLMQLDDDFEIDDKKSVKTTRTTKLMPSSSAKSSGAKTKASVYESQMCHQCQKSDRTVARCRNCAKRFCVICIQRWYSQMSKKEIEESCPYCQGNCNCKACLRRKDVNADSGDLGVPQNEDEKIRHRKHLVRALYPFLEQLNHEQQLELEMEAKIKGLLLSDVQVKRIVCSEYERIYWLVSFQNYFIVLIMNCCFLPHCQLPNAIGYHCSNNCKTSIIDFHRSCPNCSYDLCLTCCREIRGNFLPGGIVEPCIDVSNAHSHSAEHLDPHSCKKESSDICLELSSVRPNHLWRAMKNGAIPCPPEDNGGCGYECLELKCILHQSWISELREKVKRLIEVHGLEDMPTVSARCNSCFKSHDEIDSINEKLRRAATREGSNDNYLYCPSASDVECGDLEHFQGHWIKGEPIIVRNTLELTSGLSWEPMVMWRAMRELTCHGSKHLNVRAIDCLDWCEVEINIHQFFKGYSEGRAHRDAWPEMLKLKDWPPSNLFEQRLPRHGMEFIRALPYKEYTHPHTGFLNMATKLPEESLKPDLGPKTYIAYGFAEELGQGDSVTKLHCDMSDAVNILTHTEEVTLTSQHLNRIETLKQKYAVEDDLSELFKLLQNDSVVKCKSTLEENISLQVADDLSLLNGSSLTQMSKMENDGPCRKHATAKPPNDSILEKNGKAVASDGEPSSSTPRVEVLVNSGTSLERETSETINSEEGNVIIEREIVFKSPCDLDMKSELYDVKKSNAVFSNMHTSTNEVLQQTAGCISQSLDSGNMHSGQKFAKGGAVWDIFRRQDVSKLEEYLRKHCREFRHLRGSQVEEVFHPIHDQVFYLTSHHKRKLKEEFGVEPWTFIQNLGEAVFIPAGCPHQVRNLKSCIKVALDFVSPENIQECIRLTEEFRTLPPSHKANEDKLGVKKMCLYALSEAADSLVQHSSKDD	1059

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed4g2112	1059	MobiDBLite	consensus disorder prediction	775	815	-	-
	Aed4g2112	1059	SUPERFAMILY	Clavaminate synthase-like	522	1041	-	-
	Aed4g2112	1059	MobiDBLite	consensus disorder prediction	66	81	-	-
	Aed4g2112	1059	CDD	cupin_RmlC-like	944	1005	-	-
	Aed4g2112	1059	Pfam	WRC	15	51	IPR014977	-
	Aed4g2112	1059	Gene3D	Cupin	857	1030	-	-
	Aed4g2112	1059	Gene3D	Cupin	514	756	-	-
	Aed4g2112	1059	PANTHER	JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN	11	1051	IPR045109	GO:0032454\|GO:0033169
	Aed4g2112	1059	ProSiteProfiles	JmjC domain profile.	647	1021	IPR003347	-
	Aed4g2112	1059	MobiDBLite	consensus disorder prediction	1	24	-	-
	Aed4g2112	1059	ProSiteProfiles	Zinc finger RING-type profile.	181	226	IPR001841	-
	Aed4g2112	1059	Pfam	JmjC domain, hydroxylase	903	1004	IPR003347	-
	Aed4g2112	1059	MobiDBLite	consensus disorder prediction	52	128	-	-
	Aed4g2112	1059	MobiDBLite	consensus disorder prediction	10	24	-	-
	Aed4g2112	1059	ProSiteProfiles	WRC domain profile.	14	58	IPR014977	-
	Aed4g2112	1059	MobiDBLite	consensus disorder prediction	82	128	-	-
	Aed4g2112	1059	SMART	cupin_9	628	1021	IPR003347	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed4g2112	Aed-Chr4	24108122	24114823	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Jumonji	Aed4g2112		JmjC	1e-13	CL0029

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed4g2112	K15601		-	gmx:100808936	1202.19