Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2106 ATGAAGCTTTCAACATCAGGGTTGGGGCAGCAGGGACAAGAAGGAGGGGAGAAGAAGTGTCTGAATTCTGAGCTATGGCATGCATGCGCGGGGCCCCTGGTGTCCCTACCAACTGCAGGAACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTTGCTGCCACAACTAACAGAGAAATTGATGGACACATTCCCAATTACCCTAGCTTGCCACCCCAGTTGATTTGCCAACTTCACAATGTCACAATGCATGCAGATGTTGAAACAGACGAAGTATATGCTCAAATGACATTGCAGCCATTGACTCCGCAAGAGCAGAAGGATACATTTCTTCCTATGGAATTAGGCATTCCAAGTAAGCAGCCATCAAATTATTTTTGCAAGACGTTAACGGCCAGTGACACCAGCACACATGGGGGATTCTCCGTTCCTCGTCGTGCAGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCGCAGCAACCACCAGCACAGGAACTAATCGCCAGGGATCTCCATGATGTTGAATGGAAATTTCGACATATTTTTCGGGGACAGCCAAAACGACACCTTCTTACTACAGGCTGGAGTATATTTGTTAGTGCCAAGAGACTTGTGGCTGGAGATTCTGTGCTTTTCATATGGAATGAGAAGAATCAGCTTCTTTTGGGAATACGTCGTGCCAATCGACCACAAACTGTAATGCCGTCATCAGTTCTATCCAGTGATAGCATGCATATTGGACTTCTTGCAGCCGCTGCCCATGCTGCAGCAACCAATAGCTGTTTTACCGTGTTTTATAATCCAAGGGCTAGTCCATCTGAGTTCGTCATACCACTTTCAAAATATATCAAAGCTGTGTACCATACACGCATTTCTGTTGGTATGCGTTTCAGGATGCTTTTTGAGACTGAAGAGTCTAGTGTCCGCAGGTATATGGGTACAATAACTGGCATAAGCGATTTGGATTCTGTTCGTTGGCCGAATTCTCATTGGCGCTCTGTCAAGGTTGGTTGGGATGAATCAACAGCTGGAGAGAGACAACCGCGAGTATCTCTGTGGGAAATTGAGCCATTAACAACATTCCCGATGTATCCATCATTATTTCCCCTCAGACTGAAACGTCCATGGCATCCTGGCCCCTCATCTTTGCATGATGGGAGAGATGAAGCTACTAATGGGCTAATGTGGCTGAGAGGTGGACCTGTAGACCAAGGTCTCAACTCCCTAAATTTTCAAGGAGCTGGTATGTTGCCCTGGATGCAGCAGAGACTGGATCCAACTTTACTAGGAAATGATCAGAATCAACAGTACCAAGCAATGTTGGCAGCTGGTTTACAGAACTTAGGTAGTGGATATCTCATGAAGCAACAAATGATGAATTTTCAGCAGCCTTACCACTATCTTCAACAATCTGGAAACAGTAATTCTCCTTTGCAACTTCAGCAGCAGCAACCAATGCAACAATCTGTGTCTTCTAACATGCTGCAGCCACAGGCCCATGTATTGACAGAGAACCTCTCTCAGCACCTCCTTCAGAAACCACATAACAATCAAGAAGTCCAAGCACAACAGCAGCAACATACTTATCAAGACTCGCTCTTAATTCCAAGCGATCAGCTCCATCAGAGACAACACTCCAGCGTTCCTTCACCATCATATTCTAAACCGGATTTCTTGGATTCAAGCATGAAGTTCCCGGCTCCGGTTTCGCCTGGACAAAACATGCTTGGTTCACTTTGTCCTGAAGGAAGTGGCAGTCTCTTGAATTTATCCAGGAGCAGTCAGTCCTTGCTGACTGAACAGTTACCCCAACAGCAATGGACTCAAAAGTATGCACCTGTGCAGGTCAATGCCTATGGAAACACTGTGTCACATGCACAATATTCTGGAAAAGATTCTGCAATGGTGCTACCACACTGTAACTCAGATGCCCAAAATTCTACACTTTTTGGTGTCAATATTGATTCATCTGGCCTTCTCCTCCCCACCACCGTCCCTGGTTACACCACCTCGTCCGCTGACACTAATTCATCAACAATGCCATTAGTGGAGTCGGGTTTCCAGGGTTCTCTATATGGTTGCATGCAAGATTCATCGGAGTTGTTGCAAAGTGCAGGGCAAGTTGACCCACAAAACCAGACCTTTGTCAAGGTTTACAAATCAGGGTCAGTTGGGCGCTCACTCGACATATCCCGGTTCAGCAGCTATCATGAACTGCGTGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGGAAGTTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTGTTCGTCGATAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTTGTCAATAATGTTTGGTATATCAAAATACTTTCACCTGAAGACATTCAGAAAATGGGGGAACGAGCCGCAGAATCCCTTGCACTAGGTTCAGGACAACAAAGGCTTAATGGCACTGGTGCTGAGTCTCAGGACATTGTTTCTGGACCACCATCAATTGGCTCACTTGAGTACTGA 2529 0.4626 MKLSTSGLGQQGQEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREIDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGPSSLHDGRDEATNGLMWLRGGPVDQGLNSLNFQGAGMLPWMQQRLDPTLLGNDQNQQYQAMLAAGLQNLGSGYLMKQQMMNFQQPYHYLQQSGNSNSPLQLQQQQPMQQSVSSNMLQPQAHVLTENLSQHLLQKPHNNQEVQAQQQQHTYQDSLLIPSDQLHQRQHSSVPSPSYSKPDFLDSSMKFPAPVSPGQNMLGSLCPEGSGSLLNLSRSSQSLLTEQLPQQQWTQKYAPVQVNAYGNTVSHAQYSGKDSAMVLPHCNSDAQNSTLFGVNIDSSGLLLPTTVPGYTTSSADTNSSTMPLVESGFQGSLYGCMQDSSELLQSAGQVDPQNQTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGERAAESLALGSGQQRLNGTGAESQDIVSGPPSIGSLEY 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2106 842 Gene3D - 711 804 - -
Aed4g2106 842 SUPERFAMILY CAD & PB1 domains 709 789 - -
Aed4g2106 842 MobiDBLite consensus disorder prediction 470 496 - -
Aed4g2106 842 Gene3D - 126 229 IPR015300 -
Aed4g2106 842 MobiDBLite consensus disorder prediction 541 559 - -
Aed4g2106 842 SMART B3_2 128 230 IPR003340 GO:0003677
Aed4g2106 842 ProSiteProfiles PB1 domain profile. 715 799 IPR000270 GO:0005515
Aed4g2106 842 Gene3D - 292 364 - -
Aed4g2106 842 MobiDBLite consensus disorder prediction 814 834 - -
Aed4g2106 842 MobiDBLite consensus disorder prediction 541 562 - -
Aed4g2106 842 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Aed4g2106 842 CDD B3_DNA 127 228 IPR003340 GO:0003677
Aed4g2106 842 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aed4g2106 842 MobiDBLite consensus disorder prediction 814 842 - -
Aed4g2106 842 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 824 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aed4g2106 842 PANTHER AUXIN RESPONSE FACTOR 1 824 - -
Aed4g2106 842 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Aed4g2106 842 Pfam AUX/IAA family 706 803 IPR033389 -
Aed4g2106 842 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2106 Aed-Chr4 24062585 24070489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2106 98 813 B3 DNA Binding Superfamily AT5G37020 68.269 0.0 921
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aed4g2106 AUX_IAA 4.2e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2106 - - gmx:100784373 1575.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2106 4 24062585 24070489 Aed3g1982 3 23942227 23952918 PCT