Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2090 ATGGAAGCTGATCGGAAGCGATTGAAGCCTCGGCTTGAGCGTCGGAACGCCATGAAGAACATCGAATACCAATTGAAGGACGACGGTTATTTGAATCAAAGGAGTTTCCGTGTCGACGGGGAATTCGACCGCATATTTCACAGCCTGGGCCTGTCTGGGCCCGAGGAATTTGCCATCCCAGCTGCAGCTTGGGAAGAAGCCCAGGCCCAAAAGGAGAGGGGAATTAAGGGCGTTTCTGAGTGGTCGTGGCAAAAGGGCGAGATCTTAGGAAAGGGCTCCTTTGGAACCGTCTATGAAGGATTCACCGATGATGGCAACTTTTTTGCTGTCAAGGAGGTGTCTTTGCTGGATGACGGAACCCAGGCCAAACAGAGCATTTTCCAACTTCAGCAGGAAATTTCTCTTTTGAGTCAGTTCCGTCACGACAACATAGTTAGGTATTTTGGCAGTCACAAGGATAATGATAAGCTGTATATATTTCTCGAGCTTGTAACAAAAGGATCATTAGCAAGTCTCTATCAAAAGTATGGTTTAAGGGAATCTCAAGTTTCTGCATACACAAGGCAAATTTTGAGTGGCTTGAAGTATCTTCATGATCGTAATGTGGTTCACAGGGATATCAAGTGTGCCAATATATTGGTTGATGCCAATGGGTCCGTGAAGCTTGCAGATTTTGGATTGGCGAAGGCAACAAAGTTGAATGATGTTAAATCAAGTAAAGGCTCCCCGTACTGGATGGCCCCTGAGGTTGTTAACTTGAGGAACCGTGGATATGGACTAGCAGCCGATATATGGAGCTTGGGATGTACAGTTTTAGAGATGTTGACACGGCAACCTCCTTACTCTCACTTGGAAGGAATGCAAGCGCTATTTCGGATTGGCAGTGGTCAACCTCCACCTGTTCCGGAATCATTGTCAACAGATGCCCGAGACTTCATTCTTAAATGCTTACAAGTTAATCCAAACAAACGCCCTACTGCTGCTCGGCTATTGGACCATCCATTTGTAAAGAGACCACTTCTACTTCTATCTCTCCCATAA 1041 0.4601 MEADRKRLKPRLERRNAMKNIEYQLKDDGYLNQRSFRVDGEFDRIFHSLGLSGPEEFAIPAAAWEEAQAQKERGIKGVSEWSWQKGEILGKGSFGTVYEGFTDDGNFFAVKEVSLLDDGTQAKQSIFQLQQEISLLSQFRHDNIVRYFGSHKDNDKLYIFLELVTKGSLASLYQKYGLRESQVSAYTRQILSGLKYLHDRNVVHRDIKCANILVDANGSVKLADFGLAKATKLNDVKSSKGSPYWMAPEVVNLRNRGYGLAADIWSLGCTVLEMLTRQPPYSHLEGMQALFRIGSGQPPPVPESLSTDARDFILKCLQVNPNKRPTAARLLDHPFVKRPLLLLSLP 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2090 346 Pfam Protein kinase domain 84 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g2090 346 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 5 75 - -
Aed4g2090 346 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 82 338 - -
Aed4g2090 346 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Aed4g2090 346 SMART serkin_6 83 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g2090 346 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 5 75 - -
Aed4g2090 346 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 82 338 - -
Aed4g2090 346 SUPERFAMILY Protein kinase-like (PK-like) 83 339 IPR011009 -
Aed4g2090 346 Gene3D Transferase(Phosphotransferase) domain 1 80 342 - -
Aed4g2090 346 ProSiteProfiles Protein kinase domain profile. 83 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g2090 346 ProSitePatterns Protein kinases ATP-binding region signature. 89 111 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2090 Aed-Chr4 23987893 23989871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2090 82 340 MAP Kinase Kinase Kinase AT4G08500 71.154 1.60e-131 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Aed4g2090 Pkinase 1.8e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2090 - K13414 gmx:100806902 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g2155 10 25047486 25052272 Aed4g2090 4 23987893 23989871 PCT