Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2080 ATGTCATTCCGCAGCATAGTTCGTGATGTGAGGGATAGTTTTGGGAGCTTATCTAGGCGTAGTTTTGATGTCAGAATTACTGGTCATCATAGAGGAAAATCTCAAGGATCGGTGCAGGATTTGCATGACCAAACTCTAGTAATTCAAAATAGCCGCTGGGCGAGCTTACCCCCAGAATTACTATTTGATATCATTAGAAGGCTAGAGGAGAGTGAGAATACATGGCCTGCTCGAAAGCATGTTGTTGCATGTGCTGCAGTTTGCCAGTCTTGGAGGAATATGTGCAAGGATATCGTTAAGAGCCCAGAGTTATGCGGCAAACTTACATTCCCTGTGTCCTTGAAGCAGCCTGGGCCACGGGATGGAATCATTCAATGTTTTATCAAAAGAGATAAATCTAATTTAACATACCACCTATTCCTTTGTCTCAGCCCTGCTTTGTTAGTTGAAAATGGAAAATTCCTCCTTTCTGCTAAGAGGACAAGGAGAACAACTTACACTGAGTACGTTATTTCCATGGATGCTGACAACATCTCTAGATCAAGTAACACTTACATCGGAAAGCTGAGATCAAATTTTCTTGGTACCAAATTCATTATATACGATACACAGCCTCCATACTCTTCTGCCCATATATGCCCTCCTGGGACTGGGAAGACGAGCCGCAGATTTTATTCCAAAAAGGTCTCGCCTAAGGTCCCATCTGGGAGTTACAACATAGCTCAGGTAACATATGAACTAAATGTGCTTGGGACTCGAGGCCCAAGAAAGATGCACTGTGTTATGCATTCAATACCAGCTTCAGCACTTGATGCGGGTGGCACCGTTCCTGGCCAGCCAGAGCTTCTTCCCCGTTCCCTGGAGGACTCATTTCGAAGCATCTCGTTTTCAAAGTCTCTAGATCGTTCTATTGAGTTCAGCAGTTCGCGGTTTTCTGAGATTGGGGAATCCTGCATCAATGATGATGATGGCAAGATGAGACCTTTGGTTCTGAAAAACAAGCCTCCAAGATGGCATGAACAGTTACAATGTTGGTGCCTTAATTTCCGTGGACGAGTAACGGTTGCATCTGTTAAAAACTTTCAGTTGATTGCTGCCACCCAACCAGCTGCTGGTGCACCTACACCATCTCAACCAGCTCCACCGGAACATGACAAGATTATTCTTCAGTTTGGCAAAGTTGGGAAAGACATGTTCACCATGGATTACCGGTACCCTTTATCTGCATTCCAAGCTTTTGCAATATGCTTGAGCAGCTTTGACACCAAACTGGCTTGTGAATAA 1284 0.4431 MSFRSIVRDVRDSFGSLSRRSFDVRITGHHRGKSQGSVQDLHDQTLVIQNSRWASLPPELLFDIIRRLEESENTWPARKHVVACAAVCQSWRNMCKDIVKSPELCGKLTFPVSLKQPGPRDGIIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYSSAHICPPGTGKTSRRFYSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCVMHSIPASALDAGGTVPGQPELLPRSLEDSFRSISFSKSLDRSIEFSSSRFSEIGESCINDDDGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2080 427 Pfam F-box domain 53 100 IPR001810 GO:0005515
Aed4g2080 427 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 427 - -
Aed4g2080 427 Gene3D - 48 103 - -
Aed4g2080 427 Pfam Tub family 114 422 IPR000007 -
Aed4g2080 427 PRINTS Tubby superfamily signature 384 403 IPR000007 -
Aed4g2080 427 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Aed4g2080 427 PRINTS Tubby superfamily signature 331 348 IPR000007 -
Aed4g2080 427 PRINTS Tubby superfamily signature 349 365 IPR000007 -
Aed4g2080 427 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Aed4g2080 427 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Aed4g2080 427 PRINTS Tubby superfamily signature 405 427 IPR000007 -
Aed4g2080 427 ProSitePatterns Tub family signature 1. 349 362 IPR018066 -
Aed4g2080 427 Gene3D Tubby Protein; Chain A 112 421 IPR025659 -
Aed4g2080 427 ProSitePatterns Tub family signature 2. 412 427 IPR018066 -
Aed4g2080 427 PANTHER TUBBY-RELATED 1 427 - -
Aed4g2080 427 SUPERFAMILY Tubby C-terminal domain-like 102 427 IPR025659 -
Aed4g2080 427 SUPERFAMILY F-box domain 49 97 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2080 Aed-Chr4 23935337 23939711 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2080 1 427 TUB Transcription Factor Family AT1G76900 70.043 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Aed4g2080 Tub 1e-117 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2080 K19600 - gmx:100814578 825.854