Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2078 ATGCAAGAGAAGAGACGCAGCGGGAATCGGGACGTGGACGTGGCTCCACGGACTAGAACTGGTCCAGTTTGTCTTCCACTGTGTCCAGTGTATCTGTCAGCTTCATCAACAAGCAAAGCCAAAAGCGTCAGACTGCAGCTACCTAGCAAATTAAGAAACACATTGTTGGTAGAAATGAAGGGGATGTGGGATGCGTTGCATGGGTTGAAACCAATATTGCTGATGGTGTTAGTGCAAATTGCATATACTATTGTTAATGTGCTTTTCAAGCTCGCCATCAACGATGGTATGAGTGTGAAGGTTGGCACTGCATATCGCCTCGCTTTTGGTTCTGCTTTCACTATTCCTCTCGCTCTTATTTCTGAAAGGAACAAAAGACCAAAGATGAGTTGGAGGGTGCTTTTGATGGCATGTCTTTGTGGGCTATTCGGGGGAAGTTTATTTCAAAACCTTTTCTACGAGTCATTGGCTTTAACATCGGCAACGTTTGCTTCTGCTCTCTACAACCTCATTCCACCCATTACCTTTGTCTTGGCCATCTGCTGCGGTTTCGAAAAGTTAAATATGAGGGCAGCAGCAGGAAGGGCCAAGGTGTTGGGAACTTTAATTGGAATTGGTGGAGCGATGGTGTTGACTTTTATCAAAGGGGCAGAGATTAATATCTGGCCTTTCCACATCAACCTTATGCACCACGTGGCGGTGCCACCATCATCAAATGTTGACAATAAATTGTTGGGGGCTCTTTGCTCCCTCGCAAGCTGCTTCTCTTTTGCTTTGTGGCTCACCATTCAGGCTAAAATGAGCAAAGAATACCCATGTCACTACTCAAGCTCGGCTCTGATGTCCACAGCTGGAGCAATACAAGCCACTGCTTTTGGTTTCTGTTTTGAGAGGGATTTCACCCAATGGAAGTTGGGTTGGAATATTAGGCTACTCACTGTCGCTTATTCGGGAATCGTGGCCTCTGGAATAGTGGTTATCATCACTGCGTGGTGCATACAAATGAGAGGGCCTCTGTTTGCGTCTGTTTTCAACCCTCTCATGCTTGTGCTTGTGGCTATCGCCGGTTCTTTGATGTTGAATGAGAACTTATATGTAGGAAGTGTGATTGGAGCAGTGCTGATTGTGTGTGGACTGTACACTGTTCTGTGGGGTAAGAGTAAAGAGATTAAAAATATAACTCAGTTAGTGCCATCAGAAACCATCCGAGAAGCTGAAGCCATACAAGTTGTTGTCATGTCCATACCAATAGATTCTGATAAATGTGACCACAACAATCAAACCGAAATCACTATTACAAGGAATTTTGACAAAGATTGTGCCGATTTGACAAAAAATAACGAAGAAGATGCGTGA 1356 0.4454 MQEKRRSGNRDVDVAPRTRTGPVCLPLCPVYLSASSTSKAKSVRLQLPSKLRNTLLVEMKGMWDALHGLKPILLMVLVQIAYTIVNVLFKLAINDGMSVKVGTAYRLAFGSAFTIPLALISERNKRPKMSWRVLLMACLCGLFGGSLFQNLFYESLALTSATFASALYNLIPPITFVLAICCGFEKLNMRAAAGRAKVLGTLIGIGGAMVLTFIKGAEINIWPFHINLMHHVAVPPSSNVDNKLLGALCSLASCFSFALWLTIQAKMSKEYPCHYSSSALMSTAGAIQATAFGFCFERDFTQWKLGWNIRLLTVAYSGIVASGIVVIITAWCIQMRGPLFASVFNPLMLVLVAIAGSLMLNENLYVGSVIGAVLIVCGLYTVLWGKSKEIKNITQLVPSETIREAEAIQVVVMSIPIDSDKCDHNNQTEITITRNFDKDCADLTKNNEEDA 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2078 451 PANTHER WAT1-RELATED PROTEIN 69 420 IPR030184 GO:0016021|GO:0022857
Aed4g2078 451 SUPERFAMILY Multidrug resistance efflux transporter EmrE 303 388 - -
Aed4g2078 451 Pfam EamA-like transporter family 245 383 IPR000620 GO:0016020|GO:0016021
Aed4g2078 451 Pfam EamA-like transporter family 70 212 IPR000620 GO:0016020|GO:0016021
Aed4g2078 451 SUPERFAMILY Multidrug resistance efflux transporter EmrE 105 211 - -
Aed4g2078 451 PANTHER WAT1-RELATED PROTEIN 69 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2078 Aed-Chr4 23926196 23929957 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2078 62 410 Nodulin-like Gene Family AT1G68170 44.507 1.62e-90 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2078 - - gmx:100798755 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g2142 10 24958930 24962002 Aed4g2078 4 23926196 23929957 PCT
Aed4g2078 4 23926196 23929957 Aed10g2143 10 24963789 24966518 PCT