Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2069 ATGGGTCACGAACACTCTAAATTGTCAGAAGGAAAAGGATCGCGTCGTGCTCGCTTCAAAGAGCGTCTGCGTCTTCACTTTCGCCGCCGCAGAAGCCCCGGCAATGGCTCTCCTGTTCACAAGCTCCTCAACGCCGATAACTTCGCCGGAATTGCTCTCCTCGCCCTCCTTCGCGCGGAGATGAAGTTCAAGGATAAATGGATCGCGTGCCTTTCTCTCGGAGAACAGACTTTCCGTACGAACACCTCTGACCACACAGACAAACCAGTTTGGAACTCTGAAAAGAAACTCCTTTTGGAACAGAATGGGGCTCATGTTGCAAGAATTTCTGTCTTCGAGACCAACAAAATCTCCAGCAATACTCTTGTTGGATACTGTGAGGTTGATCTACTTGAATTTCTGACCAAGGATTCTGATTCTGACATCGAGGTATTCAACCTTTTAGATCCATCAGTGCCTGGAAAAGTGGTTGGCAACATTTCCATTTCATGCTCTGTAGAGGATCCAATTGAAACGGAGAAAGGCTTTGTTAGACGCATTTTATCTATAGTGGACTACAATGAAGATGGGATGCTTTCACTTTCTGAATTTTCTGACCTAATTGATGCTTTTGGCAATCAAGTTGCAACCAGCAAGAAAGAAGAGCTGTTTAAAGCAGCTGACAAAAATGGAGATGGTGTTGTGAGCATGGATGAGTTGGCTTCCCTTCTTACTTTTCATCAAGAACAGGAACCATTATTGAATTGCTGTCCTGTGTGTGGTGAGGTTCTTCAGATTTCAGACCAGTTGAACAGCATGATCCACTTAACTCTTTGTTTTGATGAAGGGACTGGTAACCAGGTGATGGCTGGAGGATTCTTGACAGATAAGCAGGCTTCATATGGGTGGTTCTTCAAACTGAGTGAATGGGCCCATTTCTCATCCTATGATGTTGGTATTCGATCTGGATCAAGTGCATCCCATATTCTGGTATATGATCGGAAGTCTCAAAGGCTTGTTGAAGAAATAATTGACAAAAAAATTGTATTGTCAATGAGAGCCATTTATCAGTCAAAAATAGGTCTTGGACTAATGGACATAGGGGTGAAGGAGCTCCTGCAAAACATTTCTGAAAAGCAGGGAGCGCGAATGGATTCACCTGAATCGTCTGCAGATATACCAAAATTTATTGAATCTTTTAAGGATCAAATCAATTTGGCTGAAGTCAAGTATCCACTGGAACACTTTAAGACATTCAATGAATTTTTCATAAGAGAGTTAAAGCCTGGTTCAAGACCAATTGCTTCTGCTGAACATGATGATATTGCTGTATGTGCTGCGGATTGCCGTCTCATGGCATTTAAATCAGTTGATGATAGTACAAGATTCTGGATCAAGGGTCGAAAGTTTTCAGTTCAAGGTCTTTTAGGTAAAGAAATGTGTTCCAGTGCTTTTGTTGATGGAACAATGGTGATTTTCCGTTTGGCACCACAGGTGGCATTTGTTGCAATAGGAGCTACAATGGTTGGTAGCATTACTTTTACAAAGAAAAAGGGCGACCCTGTTAAGAAAGGAGATGAGTTTGGATATTTCTCATTCGGTGGAAGCACTGTAATTTGCGTTTTTGAAAAGGTTGTGGCATTACCATTCGCTGCCTCATTTTCGCGGCGCAGAGCAGAACGACTCTGGTTCTTGGGATTCCGATCGATCGAAGGCGGCGTCAGCATGGTGAACGTTCCAAAAACAAAGAAGACATACTGCAAGAGTAAGGAGTGCAAGAAGCACACACTGCACAAGGTAACCCAATATAAGAAGGGTAAGGATAGCATTGCTGCCCAAGGTAAACGCCGTTATGATCGCAAACAATCCGGTTATGGTGGTCAAACTAAGCCTGTCTTCCACAAGAAGGCTAAGACCACCAAGAAGATTGTTCTGAGGTTGCAATGCCAGAGTTGCAAGCATGTCTCACAACATCCTATTAAGAGGTGCAAGCATTTTGAGATTGGTGGCGACAAGAAGGGCAAGGGAACATCACTTTTCTAG 2022 0.4332 MGHEHSKLSEGKGSRRARFKERLRLHFRRRRSPGNGSPVHKLLNADNFAGIALLALLRAEMKFKDKWIACLSLGEQTFRTNTSDHTDKPVWNSEKKLLLEQNGAHVARISVFETNKISSNTLVGYCEVDLLEFLTKDSDSDIEVFNLLDPSVPGKVVGNISISCSVEDPIETEKGFVRRILSIVDYNEDGMLSLSEFSDLIDAFGNQVATSKKEELFKAADKNGDGVVSMDELASLLTFHQEQEPLLNCCPVCGEVLQISDQLNSMIHLTLCFDEGTGNQVMAGGFLTDKQASYGWFFKLSEWAHFSSYDVGIRSGSSASHILVYDRKSQRLVEEIIDKKIVLSMRAIYQSKIGLGLMDIGVKELLQNISEKQGARMDSPESSADIPKFIESFKDQINLAEVKYPLEHFKTFNEFFIRELKPGSRPIASAEHDDIAVCAADCRLMAFKSVDDSTRFWIKGRKFSVQGLLGKEMCSSAFVDGTMVIFRLAPQVAFVAIGATMVGSITFTKKKGDPVKKGDEFGYFSFGGSTVICVFEKVVALPFAASFSRRRAERLWFLGFRSIEGGVSMVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2069 673 PANTHER PHOSPHATIDYLSERINE DECARBOXYLASE 491 568 IPR003817 GO:0004609|GO:0008654
Aed4g2069 673 Pfam C2 domain 69 135 IPR000008 -
Aed4g2069 673 PANTHER PHOSPHATIDYLSERINE DECARBOXYLASE PROENZYME 2 491 568 - -
Aed4g2069 673 PANTHER PHOSPHATIDYLSERINE DECARBOXYLASE PROENZYME 2 21 491 - -
Aed4g2069 673 ProSitePatterns Ribosomal protein L44e signature. 631 642 IPR000552 GO:0003735|GO:0005840|GO:0006412
Aed4g2069 673 ProSitePatterns EF-hand calcium-binding domain. 185 197 IPR018247 -
Aed4g2069 673 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 66 166 IPR035892 -
Aed4g2069 673 ProSiteProfiles EF-hand calcium-binding domain profile. 172 207 IPR002048 GO:0005509
Aed4g2069 673 CDD EFh 177 238 IPR002048 GO:0005509
Aed4g2069 673 CDD C2 74 144 - -
Aed4g2069 673 ProSiteProfiles EF-hand calcium-binding domain profile. 208 243 IPR002048 GO:0005509
Aed4g2069 673 MobiDBLite consensus disorder prediction 602 624 - -
Aed4g2069 673 ProSitePatterns EF-hand calcium-binding domain. 221 233 IPR018247 -
Aed4g2069 673 Pfam Ribosomal protein L44 587 662 IPR000552 GO:0003735|GO:0005840|GO:0006412
Aed4g2069 673 Pfam EF-hand domain pair 182 236 IPR002048 GO:0005509
Aed4g2069 673 MobiDBLite consensus disorder prediction 602 616 - -
Aed4g2069 673 PANTHER PHOSPHATIDYLSERINE DECARBOXYLASE 21 491 IPR003817 GO:0004609|GO:0008654
Aed4g2069 673 SMART efh_1 176 204 IPR002048 GO:0005509
Aed4g2069 673 SMART efh_1 212 240 IPR002048 GO:0005509
Aed4g2069 673 Gene3D - 165 246 - -
Aed4g2069 673 SUPERFAMILY EF-hand 169 245 IPR011992 -
Aed4g2069 673 SUPERFAMILY Zn-binding ribosomal proteins 570 662 IPR011332 GO:0006412
Aed4g2069 673 Gene3D - 569 673 - -
Aed4g2069 673 Gene3D C2 domain 55 164 IPR035892 -
Aed4g2069 673 Pfam Phosphatidylserine decarboxylase 492 538 IPR003817 GO:0004609|GO:0008654
Aed4g2069 673 Pfam Phosphatidylserine decarboxylase 412 491 IPR003817 GO:0004609|GO:0008654
Aed4g2069 673 ProSiteProfiles C2 domain profile. 19 143 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2069 Aed-Chr4 23862552 23871490 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2069 1 537 EF-hand Containing Proteins AT4G25970 60.833 0.0 732
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2069 K01613 - gmx:100794517 974.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g2126 10 24884321 24885376 Aed4g2069 4 23862552 23871490 PCT