Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2061 ATGGAGAGAGTGACTTCATCTTTAATGGGTTCATTTTTTGTTTGGGCAATTTTGGTGCTTGATTTGGTACTTAAGGCTTCTGGCAATCAGGAGGGCGATGCCCTGAATGCTTTGAAGAGCAACTTGCAAGATCCTAACAATGTTCTTCAAAGCTGGGATGCTACCCTTGTCAATCCTTGCACATGGTTTCATGTTACATGCAACAGTGAGAACAGTGTGACCCGTGTTGATCTTGGAAATGCAGATCTTTCTGGTCAACTGGTTCCACAACTTGGTCAACTCACAAATTTACAGTACTTGGAACTTTATAGTAATAATATAACTGGAAAAATTCCAGACGAGCTTGGGAACTTAACAAATTTGGTGAGCTTGGATCTTTACTTGAACACTTTAAATGGTCCCATACCAAGTACTTTGGGCAACCTTGCAAAACTACGTTTCCTGCGTCTCAATAATAATAGCTTGACAGGGGGCATACCCATGTCTTTGACAAATGTTTCTTCACTGCAAGTTCTTGATCTCTCAAATAACCAGCTAAAAGGAGATATCCCAGTGAATGGTTCATTTTCATTATTTACCCCCATCAGTTATCAAAACAATCCTGGCTTGATACAACCAAAAAACGCTCCATCTCCAGTTTCTCCAACGCCACCAGCAGCATCTTCAGGTAACAGTAATACTGGAGCTATTGCTGGAGGAGTTGCTGCTGGTGCTGCTCTGTTGTTTGCAGCCCCTGCAATTGCACTTGCTTATTGGCGAAGAAGGAAACCTCAGGATCATTTTTTTGATGTTCCTGCTGAGGAGGATCCTGAAGTTCACCTTGGTCAGCTTAAAAGGTTTTCTCTGCGTGAGCTGCAAGTTGCAACAGATAACTTTAGTAACAAACACATTCTGGGTAGAGGTGGATTTGGAAAGGTTTATAAAGGACGCTTAGCTGATGGATCTCTTGTAGCAGTGAAAAGACTTAAAGAGGAACGCACACAGGGTGGGGAGCTGCAATTTCAAACCGAAGTGGAAATGATCAGCATGGCTGTGCATCGTAATTTGCTTCGGCTTCGTGGTTTTTGTATGACACCTACTGAACGGTTGCTTGTGTATCCTTACATGGCTAATGGAAGTGTAGCATCATGTTTACGAGCTCGACTTGCCAATGATGATGATGTCATGTTGCTTGATTGGGTTAAAGGACTTCTCAAAGACAGGAAATTGGAAACACTGGTAGATGCAGATTTACAGGGTAATTATATTGATGAGGAGGTAGAGCAGTTAATCCAAGTGGCCTTACTATGCACACAAGGCTCTCCTATGGAAAGACCTAAAATGTCTGAGGTGGTCAGAATGCTAGAAGGTGATGGTTTGGCTGAGAAATGGGAGCAATGGCAGAAAGACGAGACGTTCCGGCAAGACTTTAACAACAACATACATCACCCTAATGCAAATTGGATAGTAGATTCAACTTCCCATATCCAGGCAGATGAACTATCAGGTCCTAGATGA 1497 0.4255 MERVTSSLMGSFFVWAILVLDLVLKASGNQEGDALNALKSNLQDPNNVLQSWDATLVNPCTWFHVTCNSENSVTRVDLGNADLSGQLVPQLGQLTNLQYLELYSNNITGKIPDELGNLTNLVSLDLYLNTLNGPIPSTLGNLAKLRFLRLNNNSLTGGIPMSLTNVSSLQVLDLSNNQLKGDIPVNGSFSLFTPISYQNNPGLIQPKNAPSPVSPTPPAASSGNSNTGAIAGGVAAGAALLFAAPAIALAYWRRRKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKHILGRGGFGKVYKGRLADGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRARLANDDDVMLLDWVKGLLKDRKLETLVDADLQGNYIDEEVEQLIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWEQWQKDETFRQDFNNNIHHPNANWIVDSTSHIQADELSGPR 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2061 498 SUPERFAMILY L domain-like 30 195 - -
Aed4g2061 498 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 381 - -
Aed4g2061 498 Gene3D Transferase(Phosphotransferase) domain 1 370 468 - -
Aed4g2061 498 PANTHER BNAA08G11770D PROTEIN 11 381 IPR031048 GO:0004675|GO:0005102|GO:0006468
Aed4g2061 498 PANTHER BNAA08G11770D PROTEIN 380 498 IPR031048 GO:0004675|GO:0005102|GO:0006468
Aed4g2061 498 ProSitePatterns Protein kinases ATP-binding region signature. 298 320 IPR017441 GO:0005524
Aed4g2061 498 MobiDBLite consensus disorder prediction 205 224 - -
Aed4g2061 498 SUPERFAMILY Protein kinase-like (PK-like) 387 460 IPR011009 -
Aed4g2061 498 Pfam Protein tyrosine and serine/threonine kinase 295 381 IPR001245 GO:0004672|GO:0006468
Aed4g2061 498 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 380 498 - -
Aed4g2061 498 SUPERFAMILY Protein kinase-like (PK-like) 270 383 IPR011009 -
Aed4g2061 498 Pfam Leucine Rich Repeat 168 185 IPR001611 GO:0005515
Aed4g2061 498 Pfam Leucine Rich Repeat 96 118 IPR001611 GO:0005515
Aed4g2061 498 ProSiteProfiles Protein kinase domain profile. 292 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g2061 498 Gene3D Ribonuclease Inhibitor 27 210 IPR032675 -
Aed4g2061 498 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Aed4g2061 498 ProSiteProfiles Leucine-rich repeat profile. 168 190 IPR001611 GO:0005515
Aed4g2061 498 Gene3D Phosphorylase Kinase; domain 1 261 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2061 Aed-Chr4 23810647 23817900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2061 380 498 Receptor kinase-like Gene Family AT4G33430 79.339 1.19e-56 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Aed4g2061 PK_Tyr_Ser-Thr 3.8e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2061 K13416 - gmx:100800522 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g2119 10 24817187 24823217 Aed4g2061 4 23810647 23817900 PCT