Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2056 ATGGTTGTTGTGACCTTCAGCTCCAGCCTGAGCATAAATTCCCTTCCAGTCTCGACAAGAGTACGACCACCTCGTACGACGCCGTTTGTTGTTTCATGCAGAGCCACAAAACAGCACGACATGTACAACAACTTGTACAAAATACTGAGTCTGAGTCCGAAAAGTGCAACCACTGAAGACATCAAGAAAGCATACAGATCAATGGCGCTTCGGTACCATCCAGATGCGTGCCATGATGGTTCCAAGAAGGAGGAAAGAACGAGGATGTTTGTGCAACTCAACGAAGCTTACAAGACATTATCGAATCCGAGGCTTCGAGCAGAGTATGACTGTGAATTATTGGGTTTGAGTTTGAGAAGCGACGATCGTGAGAGTTGGAGATGTGTATGGCAGGCGCAACTGGCTGAGTTGAAGAGAAGGTCGCACAGACGTCGTCACAGAGCAATGGATATTCTGATAACCTTAAACTCAACAAGTCTTAGCATTTCCAAAGCATTTAATTTCGATTCACTTTCAAAGAAACAGCAAAGACAACCTCGTACGCAGTTTGGTGTTTCATGCAGAGCCACAAAAGAGCACGACAACAACCTGTACAAAATATTAAGTCTGAGTCCCAATAGTGCAACCACGGATGACATCAAGAAAGCATACAGATCAATGGCTCTTCGGTGCCATCCAGATGTGTGCCATGATGGTTCCAAGAAGGAGGAAACAACGAGGATGTTTGTGGAACTCAACGAAGCTTACAGAACACTATCGAATCCGAGGCTTCGAGCAGAGTATGACTATGAATTGGGTTTGAGTACTGTTATTGATCATGATGAGAGTTGGAGATATGTGTGGCAGGAGCAAGTGGCTGAGTTGAAGAGAAGGTCTCACATACGTATGACGCAAAAGGAGGGACCGTGGAGCACTAGAGTCAGAGCGCAAAACATTAATTGA 942 0.4522 MVVVTFSSSLSINSLPVSTRVRPPRTTPFVVSCRATKQHDMYNNLYKILSLSPKSATTEDIKKAYRSMALRYHPDACHDGSKKEERTRMFVQLNEAYKTLSNPRLRAEYDCELLGLSLRSDDRESWRCVWQAQLAELKRRSHRRRHRAMDILITLNSTSLSISKAFNFDSLSKKQQRQPRTQFGVSCRATKEHDNNLYKILSLSPNSATTDDIKKAYRSMALRCHPDVCHDGSKKEETTRMFVELNEAYRTLSNPRLRAEYDYELGLSTVIDHDESWRYVWQEQVAELKRRSHIRMTQKEGPWSTRVRAQNIN 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2056 313 SUPERFAMILY Chaperone J-domain 188 261 IPR036869 -
Aed4g2056 313 ProSiteProfiles dnaJ domain profile. 44 113 IPR001623 -
Aed4g2056 313 SMART dnaj_3 195 257 IPR001623 -
Aed4g2056 313 SMART dnaj_3 43 105 IPR001623 -
Aed4g2056 313 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 15 146 - -
Aed4g2056 313 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 155 312 - -
Aed4g2056 313 CDD DnaJ 44 102 IPR001623 -
Aed4g2056 313 Pfam DnaJ domain 196 262 IPR001623 -
Aed4g2056 313 Pfam DnaJ domain 44 110 IPR001623 -
Aed4g2056 313 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 155 312 - -
Aed4g2056 313 SUPERFAMILY Chaperone J-domain 39 113 IPR036869 -
Aed4g2056 313 CDD DnaJ 196 254 IPR001623 -
Aed4g2056 313 Gene3D DnaJ domain 32 135 IPR036869 -
Aed4g2056 313 Gene3D DnaJ domain 184 289 IPR036869 -
Aed4g2056 313 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 15 146 - -
Aed4g2056 313 ProSiteProfiles dnaJ domain profile. 196 265 IPR001623 -
Aed4g2056 313 PRINTS DnaJ domain signature 47 65 IPR001623 -
Aed4g2056 313 PRINTS DnaJ domain signature 65 80 IPR001623 -
Aed4g2056 313 PRINTS DnaJ domain signature 85 105 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2056 Aed-Chr4 23773411 23778118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2056 198 273 C2H2 Transcription Factor Family AT1G74250 38.462 1.05e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2056 - - gmx:100783590 224.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g2116 10 24806653 24807183 Aed4g2056 4 23773411 23778118 PCT