Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2042 ATGGCGGATGGTGCTTCTTACGGATTGCGTCGTCCATTAGATATTCAGCAATTACAATTTGAAGCCCAGCATCGATGGTTGCGACCTGCAGAAATTTGTGAAATTCTTCGTAATTATCGGATGTTTCATATCACATCAGAACCTCATAACAGACCACCGAGTGGTTCACTTTTTCTTTTTGATCGGAAGGTTTTGAGATACTTTAGAAAGGATGGGCATAATTGGAGAAAGAAAAAAGATGGGAAAACTGTGAAAGAAGCTCATGAAAAGTTGAAGGTTGGAAGTGTTGATGTGTTGCACTGCTACTATGCCCATGGAGAAGAAAATGAAAATTTTCAAAGGCGAAGCTACTGGATGCTTGAACCGGATATGATGCACATAGTATTTGTCCATTACTTGGAAGTTAAGGGTAACAAAAATATTGTAGTAAATACTGAAGGTGATGAGGTCCAATCAGATTCCCGAAAAGTATCTTCTCCATCATCTAGCCTTCTCACACATCATAGCGGTGTTACTTCACTGAGTACAGATTCCGTGAGCCCAACAACCAGTTTGATGTCTTTACGTGAAGATGCTGATTCTGAGGATATCCACCAAGCAAGTTCTGGGTTGTGCCGAATACATGAGTCACAACATAATGGGAATGGTCTATTGGTGGAAAAGATTGATGCTGCTTCGAACAGTTCATATATTAGGCATCCTTTTTCAGGTGATCATGACCAGTCATCAATTTCTGGATCGGATTATATCCCAGTTGTTCATGGGGATAAATTTAGAGAAGATTATACTGCTTCTATTGATGGTCAGAAAGCACATGGCGTGGCACCATGGGGCACTGTCTTGCAAAGCACTGCCAAATTGCATAATGATCCTTCTCTTGCATCATTTCCTCCCATCCCATCTAGTTCAATGGGAGACGTCCTTGAACAAGAACATACCCTTTTTGGTGATCTTTTAATGAGCCAAAGAGGTCTCACTGAGGAAGCAGAGAGCTCTCAGTCTCTCCAATCAAATTGGCAGATTCCTTTTGAAGACAATTCAGGAGACATGCCAATGTTAACCCAAACCCAACCATTCGGTCTGCAATTCAGATCTGATTATGGTACCAGTTTACTAGGGAATGAAACTCGTAATGCAAGTTCTGAAATTGCTTCGATCCTGTACAGTTTTCATGGTGAACCAAAAGAGCAGCCTATGCAGCAAAACTATCCACAAGAGCTTGAAGATGGACAATCTCAACATGCACTAAAATCCAATTCTGCAAATGAAGTTCCTGATGAAGAAACTATCAACTATGGCTTAACTGTGAAGCGCACATTATTGGACAAAGACGAGAGCCTGAAGAAGGTTGATAGCTTCTCTCGGTGGATTACTAAAGAACTTGGAGAGGTGGCTAATTTGAATATGCAGTCTTCACCTGGTCTTTCATGGAGTACAGATGAATGCCAGCATGTGATAGATGACACCTCATTGAGCCCATCTCTCTCTCAAGACCAACTGTTTAGTATAAATGATTTTTCACCTAAATGGGCTTATGCTGAGTCAGAAATTGAGGTGTTGATTATTGGATCATTTTTGAAGTGTCAACCAGAGGTGACAACCTGTAACTGGTCCTGTATGTTTGGGGAAGTTGAGGTTCCTGCTGAGGTTTTAGGCGATGGAATTTTGTGCTGTCAAGCTCCGCGTCATAAGGTTGGACGGGTCCCTTTCTATGTAACATGTTCCAATAGGTTAGCTTGTAGTGAAGTGCGGGAATTCGATTTCAGGGAGGGCTTTGCTAGAAATGTAGATTTTGCAGACTTTTTTAACAATTCAACTGAAATGCGGTGTCATTCGCGACTGGAGGATTTTCTTTCTTTAAAACCAGTGGACCCTTCAAATCATTCTTTTGAGGGTGATATGGAGAAAAGAAACTTAGTTTTTAAGCTCATTTCACTGAGAGAGGAAGAGGAATATTCAAATAAGGATGAACTGACTACAGAATTGGATATATCCCAACACATGGTGAAGGTGCAACTGTTTCACAGGCAGGTTAAAGAGAAGCTGTTCTCATGGCTTCTTCACAAAGCAACTGAGAGTGGTAAAGGGCCAAATGTATTAGATGAGGATGGGCAAGGTGTGCTACATTTAGCAGCTATTCTTGGTTATGATTGGGCCATAAATCCAATTATATCTGCTGGAGTTAATATCAACTTCCGAGATGTGAATGGATGGACAGCTCTTCATTGGGCTGCATACTGGGGCAGAGAGCGGACAGTTGCTGTCCTTGTCTCCATGGGCGCATATTGTGGAGCATGGACAGATCCATCTCCTGCATTTCGATCAGGTGCAACAGCTGCAGATCTTGCCTCTAACTATGGGCACAAAGGAATTGCTGGTTTTCTTGCCGAGTCTTCATTAACTGACCACCTAGAAACCCTCACAATGGATGATAAAAAAGGTGGTCGGCAAGAAATTTCAGGAATGAAAGTGGTGCAGACAGTTTCAGAACGAACTGCAACACCTGTGCATGATGGTGATATGCCAGATGCCCTCTGCCTCAAGGATTCGTGCACTGCTGTCCTTAATGCAACACAAGCTGCTGATCGTATACATCAAGTATACAGAATGCAGTCTTTTCAGAGGAAGCAATTAACTCAGTATAAAGGTGATGAGCTTGGATTGTCAGATCAGCTAGCTCTTTCCCTTCTAGCTTCTAGGGCATGTAAATCTGGACAAGGACATGGTTTAGCCAATGCTGCTGCAATACAGATACAGAAAAAGTTTCGCGGTTGGAAGAAGAGAAAAGAATTCTTGATGATTCAGCAAAGAATTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTAAGGAAACAGTATAAACCAATCCTCTGGTCTGTGGGAATCCTGGAGAAGGTCATATTACGTTGGAGGCGCAAGGGTAGTGGTTTACGTGGATTTCGACCAAATGCCCTTAATAAAGTCCCCAAACAACAAAATGATTCTCTGAAAGAGGATGATTATGATTATCTCAAGGAGGGACGGAAACAAAAGGAAGAAAAGATCCAAAAAGCCCTATCAAGGGTGAAGTCCATGGTTCAGTATCCAGAGGCACGTGCTCAATACCGGCGTCTCTTAAATGTTGTCGAGGACTTCCGTCAAACCAAGGTATCTAACAAGGGTTTGATCAATTCTGAAGAAACAGTTGACGGTGTGGAGGATTTGATTGATATTGATATGCTTTTAGACGATGATAAGTTCATTCCTATAGCATTTGATTGA 3264 0.42 MADGASYGLRRPLDIQQLQFEAQHRWLRPAEICEILRNYRMFHITSEPHNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEPDMMHIVFVHYLEVKGNKNIVVNTEGDEVQSDSRKVSSPSSSLLTHHSGVTSLSTDSVSPTTSLMSLREDADSEDIHQASSGLCRIHESQHNGNGLLVEKIDAASNSSYIRHPFSGDHDQSSISGSDYIPVVHGDKFREDYTASIDGQKAHGVAPWGTVLQSTAKLHNDPSLASFPPIPSSSMGDVLEQEHTLFGDLLMSQRGLTEEAESSQSLQSNWQIPFEDNSGDMPMLTQTQPFGLQFRSDYGTSLLGNETRNASSEIASILYSFHGEPKEQPMQQNYPQELEDGQSQHALKSNSANEVPDEETINYGLTVKRTLLDKDESLKKVDSFSRWITKELGEVANLNMQSSPGLSWSTDECQHVIDDTSLSPSLSQDQLFSINDFSPKWAYAESEIEVLIIGSFLKCQPEVTTCNWSCMFGEVEVPAEVLGDGILCCQAPRHKVGRVPFYVTCSNRLACSEVREFDFREGFARNVDFADFFNNSTEMRCHSRLEDFLSLKPVDPSNHSFEGDMEKRNLVFKLISLREEEEYSNKDELTTELDISQHMVKVQLFHRQVKEKLFSWLLHKATESGKGPNVLDEDGQGVLHLAAILGYDWAINPIISAGVNINFRDVNGWTALHWAAYWGRERTVAVLVSMGAYCGAWTDPSPAFRSGATAADLASNYGHKGIAGFLAESSLTDHLETLTMDDKKGGRQEISGMKVVQTVSERTATPVHDGDMPDALCLKDSCTAVLNATQAADRIHQVYRMQSFQRKQLTQYKGDELGLSDQLALSLLASRACKSGQGHGLANAAAIQIQKKFRGWKKRKEFLMIQQRIVKIQAHVRGHQVRKQYKPILWSVGILEKVILRWRRKGSGLRGFRPNALNKVPKQQNDSLKEDDYDYLKEGRKQKEEKIQKALSRVKSMVQYPEARAQYRRLLNVVEDFRQTKVSNKGLINSEETVDGVEDLIDIDMLLDDDKFIPIAFD 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2042 1087 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Aed4g2042 1087 SMART iq_5 910 932 IPR000048 GO:0005515
Aed4g2042 1087 SMART iq_5 933 955 IPR000048 GO:0005515
Aed4g2042 1087 Gene3D Immunoglobulins 496 591 IPR013783 -
Aed4g2042 1087 ProSiteProfiles Ankyrin repeat profile. 736 761 IPR002110 GO:0005515
Aed4g2042 1087 MobiDBLite consensus disorder prediction 146 183 - -
Aed4g2042 1087 SMART CG_1_2 18 136 IPR005559 GO:0003677
Aed4g2042 1087 ProSiteProfiles Ankyrin repeat profile. 703 735 IPR002110 GO:0005515
Aed4g2042 1087 Pfam Ankyrin repeats (3 copies) 679 762 IPR002110 GO:0005515
Aed4g2042 1087 ProSiteProfiles Ankyrin repeat region circular profile. 736 761 - -
Aed4g2042 1087 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 1087 - -
Aed4g2042 1087 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Aed4g2042 1087 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 1 1087 - -
Aed4g2042 1087 SUPERFAMILY Ankyrin repeat 687 797 IPR036770 -
Aed4g2042 1087 Pfam IQ calmodulin-binding motif 937 955 IPR000048 GO:0005515
Aed4g2042 1087 Pfam IQ calmodulin-binding motif 913 931 IPR000048 GO:0005515
Aed4g2042 1087 Gene3D - 673 858 IPR036770 -
Aed4g2042 1087 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 911 961 IPR027417 -
Aed4g2042 1087 Pfam IPT/TIG domain 503 577 IPR002909 -
Aed4g2042 1087 ProSiteProfiles IQ motif profile. 911 940 IPR000048 GO:0005515
Aed4g2042 1087 SUPERFAMILY E set domains 503 588 IPR014756 -
Aed4g2042 1087 ProSiteProfiles IQ motif profile. 934 958 IPR000048 GO:0005515
Aed4g2042 1087 Gene3D - 911 957 - -
Aed4g2042 1087 SMART ANK_2a 703 732 IPR002110 GO:0005515
Aed4g2042 1087 SMART ANK_2a 736 765 IPR002110 GO:0005515
Aed4g2042 1087 SMART ANK_2a 775 804 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2042 Aed-Chr4 23697815 23710795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2042 1 1068 CAMTA Transcription Factor Family AT5G64220 52.665 0.0 1058
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Aed4g2042 CG-1 1.4e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2042 K21596 - gmx:100818124 1958.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g2097 10 24688154 24696489 Aed4g2042 4 23697815 23710795 PCT