Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2025 ATGGAAAACGACGACGTTGACATGCACGCTTCCGACACCAACGAGGAATTGGATGACATGAAGAAGCGCTTGAAGGAGATGGAAGATGAAGCTGCTGCTTTGCGAGAGATGCAGGCCAAGGTCGAGAAGGAAATGGGATCTGTGCAAGATCCTGCAAATGCTTCTGCGAGTCAGACCAATAAAGAGGAAGTAGATTCTCGATCAGTCTTTGTAGGCAACGTGGACTATTCATGCACTCCTGAAGAAGTGCAACAGCATTTTCAGTCTTGTGGAACAGTAAACAGAGTCACCATTCGAACTGATAAGTTTGGCCAACCCAAGGGTTATGCCTATGTTGAGTTCCTTGAGGTGGAGGCTGTTCAAGAGGCCCTTTCGCTGAATGAATCTGAACTTCATGGGCGCCAATTAAAGGTAACGGCTAAAAGGACCAACATACCAGGGATGAAACAGTATCGTCCCCGCCGGTCTAATCCTTACATGGGGGGATTTCGAGGCAGAACCCCATATGCACCTCCCTTTATCTACTCTCCTTATGGATATGGAAAGGTTCCAAGGTTCAGAATGGCAATGCGCTACAGCCCCTACTATTGA 591 0.4772 MENDDVDMHASDTNEELDDMKKRLKEMEDEAAALREMQAKVEKEMGSVQDPANASASQTNKEEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALSLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPYMGGFRGRTPYAPPFIYSPYGYGKVPRFRMAMRYSPYY 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2025 196 MobiDBLite consensus disorder prediction 50 66 - -
Aed4g2025 196 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 143 IPR000504 GO:0003723
Aed4g2025 196 MobiDBLite consensus disorder prediction 41 66 - -
Aed4g2025 196 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 137 IPR000504 GO:0003723
Aed4g2025 196 SMART rrm1_1 68 139 IPR000504 GO:0003723
Aed4g2025 196 CDD RRM_II_PABPs 68 139 - -
Aed4g2025 196 Gene3D - 3 140 IPR012677 -
Aed4g2025 196 PANTHER - 4 193 - -
Aed4g2025 196 SUPERFAMILY RNA-binding domain, RBD 54 167 IPR035979 GO:0003676
Aed4g2025 196 Coils Coil 10 44 - -
Aed4g2025 196 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 4 193 - -
Aed4g2025 196 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2025 Aed-Chr4 23597694 23601743 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2025 68 138 Eukaryotic Initiation Factors Gene Family AT2G36660 31.944 5.06e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2025 K14396 - gmx:100791351 386.726