Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2023 ATGGAGAAGGAGAAGGAGAAGGAGAAGTGGAAGATGCCAATGGCCACGTTTCTCATAGACCACCATCCCGACCAGCTCCGCTCCATCTCTTCTTCTCCGGATCTCAACCTTCACTTCCCTCTTTTCATTGATTACGCAGAGTTGCTGGACAATAATCCTCGAATTGCCCATCTCCTCTTTGCCCAGCCCAACACCTACTTGCGACTATTCGATGATGCTGCCATTTGGGCCCATAAAATCGTATTGGCAGAGATGCCGGATGACAAGAAGGGTGTTGAGAAAAAATTCATTCATGTTCGTATTAACATCTGTGGCTCACCCCTTGAATGCCCCGAAACTTTTCCAAGCATAGGGCGTGTTCGCGTGCAGCACCGTGGATTTCTTCTCACTCTCAAGGGGATAGTAATCAGATCTGGAGCAATCAAGATGCATGAAGGGGAGAGGAAGTACATGTGCCATAAATGCAAAAACAGCTTCCTTGTTTATCCCGAGGTGGAAGCTCGAAACTCCATATCATTACCTTCAATTTGCCCAACTCAGCAGTCCAAGCCCTGTGGAGGCACAAAATTCCAGTATGAAGAGAATACTATAATATGCCATGATTATCAGGAGATTAAAATTCAAGAAAGTACACAGGTTCTAGATGTTGGGGCAATTCCTCGTTCAATTATGGTCATCTTAAAGGATGACCTTGTGGATGTTGTTAAAGCTGGAGATGATGTGATTGTCACGGGTCTCTTAACAGCAAAATGGTCTCCAGAGTTGAAGGATGTGCGCTGCGACCTTGATCCGGTGTTAATTGCAAACAATATAAGGAGAATCAATGAACTGAAGTCAGAAATTGATATTTCTGATGATATTGTTAAGAAATTCAAGCAGTTTTGGGTTCACTTCAAAGATGCACCTCTAAAAGGTGGGAGGAATGCTATTCTACGAGGAATTTGCCCGCAAGTATTTGGCCTTTTCACTGTGAAGCTGGCTGTTGCATTAACACTTATCGGAGGTGTGCAACATGTTGATGCTTCTGGAACTAGGGTAAGAGGGGAGTCCCACTTACTCTTGGTTGGTGATCCTGGGGAATGGATGTTAGAAGCTGGGGCTCTTGTTTTAGCAGATGGAGGATTGTGTTGCATAGATGAATTTGATAGTATGAGGGAACATGATAGAGCAACAATACATGAAGCCATGGAGCAGCAAACAATAAGTGTTGCCAAGGCTGGTCTTGTAACAACACTAAGCACTAGAACAACTGTATTTGGCGCCACAAATCCCAAAGGACAGTATGATCCTGATCAACCTCTGTCCATCAATACAACACTCTCTGGTCCTTTATTAAGCAGGTTTGATATTGTCCTTGTTCTCTTGGATACAAAAAATCCTGACTGGGATGCAGTAGTTTCATCTCATATTCTTTCTGAGGCAGAACTGGATAGAACCACCAATGATGAAGATCTGGTAAACAGCTGGCCACTTTCTACACTCAAGAGGTACATACACTATGTGAAAGAACATTTCAGACCAGTCCTAACAAGAGAGGCTGAAACAGTTATATCCAGCTATTATCAACTTCAAAGAAAATCTGCAACTCATAATGCAGCTAGAACAACCGTCCGCATGTTGGAAAGTTTGATACGCCTAGCTCAAGCCCATGCAAGGCTGATGTTCAGAAATGAGGTGACTCGACTAGATGCTATCACGGCTATTTTATGCATAGAATCCTCCATGACTACATCAGCTATTGTGGATTGCATGGGGAATGCTCTGCATTCCAATTTTACTGACAACCCTGATCAGGAATATGCGAAGCAGGAAAGATTGATCCTAGAAAAATTGGAATCAATAGACGACATTTGA 1854 0.4326 MEKEKEKEKWKMPMATFLIDHHPDQLRSISSSPDLNLHFPLFIDYAELLDNNPRIAHLLFAQPNTYLRLFDDAAIWAHKIVLAEMPDDKKGVEKKFIHVRINICGSPLECPETFPSIGRVRVQHRGFLLTLKGIVIRSGAIKMHEGERKYMCHKCKNSFLVYPEVEARNSISLPSICPTQQSKPCGGTKFQYEENTIICHDYQEIKIQESTQVLDVGAIPRSIMVILKDDLVDVVKAGDDVIVTGLLTAKWSPELKDVRCDLDPVLIANNIRRINELKSEIDISDDIVKKFKQFWVHFKDAPLKGGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTRVRGESHLLLVGDPGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTTVFGATNPKGQYDPDQPLSINTTLSGPLLSRFDIVLVLLDTKNPDWDAVVSSHILSEAELDRTTNDEDLVNSWPLSTLKRYIHYVKEHFRPVLTREAETVISSYYQLQRKSATHNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDCMGNALHSNFTDNPDQEYAKQERLILEKLESIDDI 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2023 617 Gene3D - 278 359 IPR027417 -
Aed4g2023 617 Gene3D - 360 580 IPR027417 -
Aed4g2023 617 SUPERFAMILY Nucleic acid-binding proteins 38 255 IPR012340 -
Aed4g2023 617 Pfam MCM AAA-lid domain 493 574 IPR041562 -
Aed4g2023 617 ProSiteProfiles MCM family domain profile. 306 470 IPR001208 GO:0003677|GO:0005524|GO:0032508
Aed4g2023 617 Pfam MCM OB domain 120 248 IPR033762 -
Aed4g2023 617 Pfam MCM P-loop domain 359 472 IPR001208 GO:0003677|GO:0005524|GO:0032508
Aed4g2023 617 Gene3D - 120 248 IPR012340 -
Aed4g2023 617 PANTHER DNA HELICASE MCM9 32 359 - -
Aed4g2023 617 PANTHER DNA HELICASE MCM9 359 613 - -
Aed4g2023 617 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 316 583 IPR027417 -
Aed4g2023 617 Gene3D - 144 200 - -
Aed4g2023 617 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 32 359 IPR031327 GO:0003677|GO:0005524|GO:0032508
Aed4g2023 617 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 359 613 IPR031327 GO:0003677|GO:0005524|GO:0032508
Aed4g2023 617 SMART mcm 113 576 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2023 Aed-Chr4 23584419 23591610 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2023 1 599 Core DNA Replication Machinery Family AT2G14050 69.735 0.0 915
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2023 K10738 - gmx:100776255 1135.94