Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2015 ATGGGTTTGTTGCCATTGCCAGAAATCTGTGGGTCAATTTGCCATGTGAAAAAAAACGAGCCTTGTTCTTCAGATTGCAAAGTTTGCTTCAAGATCTGCCTAACAAATCCCCAATATCCTTCTTCTTCTTCTTATTATTCTCCTCCAACGCTACCACCACAGTTTCCTCCTTTTCATTCAGATGATGATGGTGCAGATGAAGCAAACAACAACCACAAAATCTCCACCTATCTTTTCCTTGCACTTGCTCTTCTAACTGCTGCTTTCTTTGTCGTTTGTTGTCGTGCCATCTATACCAGGTTTAGCTCAAGGAGGAGGGTATCATTATCATTACAATTATCATTATCATCAAGGCGCCAACAAACACGCCCTGATGATGAAGAGCATGGCCGTATGGTGGACCACCCCATATGGTATATCCGCACCCTCGGCCTTCAGCAATCAATTATCAATGCCATCACAGTTTGCAAGTATAAGAAAGGAGAGGGCTTGATTGAAGGAACGGATTGTGCTGTTTGCTTGTGTGAGTTTCAAGAGGATGAGAATCTCAGACTATTGCCCAAATGTCATCATGCTTTTCATCTTCCTTGTATTGACACCTGGCTTAGGTCACATACCAATTGTCCCATGTGCCGGGCTCCCATTGTTTCTGACCTTGAAGCTGTTGATCCAAATTCCATGGAGAATACCCACATGGAAGTTTTGGAAAATACTGCTCCTGAGGTAGAGGAACAAGAAGCCCAATTGGAGGTTGAAGATGGAGTGAGGGTTTGTGAAACTGAAACCCCAGTTCAAGATGTGCCAATCATTCGTCCTAGAAGATCTTTTTCACTGGATTCTTTCTCTGTTGCAAATTTCAATCTTGCTCTTGCTACTGAGAACTCAAAAAGAGTGGTTGGAAACGATTTGGCAACTAGTTCCAAAGGTAGCTCTTCTTTCAGCTTAACAAGATATCTGCAGGGTGCTCCTAGTTCTTCAATGAAAAGGTCACAGTCCTACAACGGGAAATACCTTCTATCCTGGTACGCCCGCACTCAGAAGAACCCAAATGCTCATCTGAGAAGCTTTTGA 1071 0.4323 MGLLPLPEICGSICHVKKNEPCSSDCKVCFKICLTNPQYPSSSSYYSPPTLPPQFPPFHSDDDGADEANNNHKISTYLFLALALLTAAFFVVCCRAIYTRFSSRRRVSLSLQLSLSSRRQQTRPDDEEHGRMVDHPIWYIRTLGLQQSIINAITVCKYKKGEGLIEGTDCAVCLCEFQEDENLRLLPKCHHAFHLPCIDTWLRSHTNCPMCRAPIVSDLEAVDPNSMENTHMEVLENTAPEVEEQEAQLEVEDGVRVCETETPVQDVPIIRPRRSFSLDSFSVANFNLALATENSKRVVGNDLATSSKGSSSFSLTRYLQGAPSSSMKRSQSYNGKYLLSWYARTQKNPNAHLRSF 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2015 356 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 295 347 IPR044675 -
Aed4g2015 356 Coils Coil 232 252 - -
Aed4g2015 356 ProSiteProfiles Zinc finger RING-type profile. 170 212 IPR001841 -
Aed4g2015 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 220 IPR013083 -
Aed4g2015 356 Pfam Ring finger domain 169 212 IPR001841 -
Aed4g2015 356 CDD RING-H2_PA-TM-RING 169 212 - -
Aed4g2015 356 SMART ring_2 170 211 IPR001841 -
Aed4g2015 356 SUPERFAMILY RING/U-box 164 228 - -
Aed4g2015 356 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 295 - -
Aed4g2015 356 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 295 347 - -
Aed4g2015 356 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 295 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2015 Aed-Chr4 23550557 23551627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2015 132 336 C3H Transcription Factor Family AT4G33565 44.286 3.22e-47 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2015 - - gmx:100804758 494.197