Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2014 ATGTCTCAGTCTGACAGCAAGAAGAAGAAGCAGCAGCGGCAGCATGAAGAAGAAAGCAAAGACGAAGGAGGGTTGATGATCAAGCCCCAGAGCTTCACTCCACCTATCGACACCTCCCAATGGCCGATCCTCCTAAAAAACTACGACCGCCTCAATGTCCGCACCGGCCACTACACTCCCATCCCCTCCGGCTACTCCCCCTTGAAACGCCCCCTCGTCGAGTATCTCAAATACGGCGTCCTCAACCTCGACAAGCCCGCGAACCCTTCCTCCCACGAGGTCGTCGCCTGGATCAAGCGCCTCCTCCGTGTCGAGAAAACCGGCCACTCCGGTACCCTCGACCCTAAGGTGACCGGCAACCTCATCGTCTGCATCGACCGCGCCACCCGCCTCGTCAAGTCCCAGCAAGGCGCCGGTAAGGAATACGTCTGCATCGCCCGCCTCCACTCCGCCGTTCCCGAGGTCTCGAAGGTCGCCCGCGCCCTCGAAACCCTCACCGGCGCCGTCTTCCAGCGTCCCCCTTTGATCTCCGCTGTTAAGCGCCAGCTCCGTATTCGGACCATCTATGAAAGTAAGCTCCTTGAGTATGACCCTGATAGACATTTGGTTGTTTTCTGGATTTCCTGTGAGGCTGGTACCTATGTTAGGACTATGTGTGTTCACTTAGGGTTGCTTCTTGGTGTGGGTAGCCACATGCAGGAGCTTAGGAGGGTTCGGTCTGGGATCATGGGGGAGAAGGATAACATGGTTAGCATGCATGATGTCATGGATGCTCAGTGGGTTTATGATAATTATAGAGATGAGACTTATTTGAGGAGGGTTGTTATGCCCTTGGAGGTTCTTTTAACTAGCTACAAGAGGCTGGTTGTTAAGGACTCTGCTGTCAATGCTATTTGTTATGGTGCTAAGTTTATGATTCCCGGGTTGCTTAGGTTTGAGAATGATATTGATGTTGGGGAGGAGATTGTGCTTATGACTACTAAGGGTGAGGCTATTGCTCTTGGGATTGCTGAGATGACCACTGCTGTTATGGCCACTTGTGATCATGGTGTTGTGGCTAAGATTAAGAGGGTCGTCATGGATAGGGATACTTATCCCAGGAAGTGGGGTTTGGGACCCAGGGCTTCCATGAAGAAGAGGCTTATTACAGAAGGCAAGCTAGATAAGCATGGCAAGCCCAATGAGAAGACTCCTCAGGAGTGGCTCAGGAATCTGGTTTTGCCAACTGGTGGGGATAGTGTCATTGCTGGCATGGCTGCTGCTCCGGAACCTGAGAATGGAGATGGGGAAGGGAAGAAGAGAAAGAAACATGATGAAAGCACAGATAGCCCGGTTGTGCTTCCTGCTAAGAAGGTGAAAGTCAATGAAGTGGAAGAGGTTGAAAAGCAAGAGAAGGTGAAGGTGAAGAAGGTAGATGAAGAGACTGTGGAGGTTGAAGTTGAGAAGAAAGAGAAGAAGAAGAAGAAAAAGAAGGATGAAGTGGCCTCTTCTGATGAGGAGAAGACTGAGAAGAAGAAGAAGAAGAAGCACAAGGATAAGGTGGAAGATGGATCGCCAGAGTTAGACAAGTCTGAGAAGAAAAAGAAGAAGAAGAAAGACAAAGAAGCTGCCGCTGAAATTAGCAACGGAAAGGAGGATGACAGTAATGCTGATAAGAGTGAAAAGAAGAAGCATAAGAAAAAGAAAAACAAAGATGCCGAGGAAGAATAG 1710 0.5 MSQSDSKKKKQQRQHEEESKDEGGLMIKPQSFTPPIDTSQWPILLKNYDRLNVRTGHYTPIPSGYSPLKRPLVEYLKYGVLNLDKPANPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPEVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTYVRTMCVHLGLLLGVGSHMQELRRVRSGIMGEKDNMVSMHDVMDAQWVYDNYRDETYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKFMIPGLLRFENDIDVGEEIVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKRLITEGKLDKHGKPNEKTPQEWLRNLVLPTGGDSVIAGMAAAPEPENGDGEGKKRKKHDESTDSPVVLPAKKVKVNEVEEVEKQEKVKVKKVDEETVEVEVEKKEKKKKKKKDEVASSDEEKTEKKKKKKHKDKVEDGSPELDKSEKKKKKKKDKEAAAEISNGKEDDSNADKSEKKKHKKKKNKDAEEE 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2014 569 Pfam PUA domain 286 358 IPR002478 GO:0003723
Aed4g2014 569 MobiDBLite consensus disorder prediction 1 30 - -
Aed4g2014 569 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 16 516 IPR004802 GO:0006396
Aed4g2014 569 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4 16 516 - -
Aed4g2014 569 Coils Coil 471 500 - -
Aed4g2014 569 SUPERFAMILY PUA domain-like 285 366 IPR015947 -
Aed4g2014 569 SMART DKCLD_2 37 95 IPR012960 -
Aed4g2014 569 Coils Coil 549 569 - -
Aed4g2014 569 Gene3D Pseudouridine synthase 71 277 - -
Aed4g2014 569 SUPERFAMILY Pseudouridine synthase 38 283 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Aed4g2014 569 TIGRFAM CBF5: putative rRNA pseudouridine synthase 45 370 IPR004802 GO:0006396
Aed4g2014 569 Pfam DKCLD (NUC011) domain 38 95 IPR012960 -
Aed4g2014 569 MobiDBLite consensus disorder prediction 1 24 - -
Aed4g2014 569 Gene3D PUA domain 38 369 IPR036974 GO:0003723
Aed4g2014 569 TIGRFAM unchar_dom_2: uncharacterized domain 2 280 357 IPR004521 GO:0003723
Aed4g2014 569 SMART pua_5 286 360 IPR002478 GO:0003723
Aed4g2014 569 MobiDBLite consensus disorder prediction 452 554 - -
Aed4g2014 569 Pfam TruB family pseudouridylate synthase (N terminal domain) 99 151 IPR002501 GO:0006396
Aed4g2014 569 Pfam tRNA pseudouridylate synthase B C-terminal domain 216 282 IPR032819 -
Aed4g2014 569 MobiDBLite consensus disorder prediction 415 569 - -
Aed4g2014 569 MobiDBLite consensus disorder prediction 426 444 - -
Aed4g2014 569 CDD PseudoU_synth_hDyskerin 77 259 - -
Aed4g2014 569 ProSiteProfiles PUA domain profile. 285 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2014 Aed-Chr4 23542053 23543762 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2014 4 453 NAC Transcription Factor Family AT3G57150 83.516 0.0 756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2014 K11131 - gmx:100806355 882.093