Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1995 ATGGTGAGAAGGAAGATACCGATAAAGAAGATCGACGATGTAACAGCGAGGCAGGTAACATTCTCAAAGAGGAAGACTGGTCTTTTCAAGAAGGCACGCGAACTCTCTCTTCTCTGTGATGCCGAAATAGCACTCTTGGTCTTTTCACCTGCTGGCAAGCTCTTCGACTATGCTACTTCAAGTATCCAGAATGTAATTGAAAGGCATATTTTACGGTCAGAGGTGAACCTTGACAAACTAGACCAGGCATGTCCTAAGGAACAGGTTAGATGTAGTTATGCTAATTTGAACAAGGATTTTGGAGACAGGACCCGTGAAATGAGACAACTGAATGGAGAAGAATTGCAAGGATTGACCCTAAGGGAACTACAGAAATTAGAAGAACGACTTGACTCATCCTTGATCCGTGTTTCTAAAGCCAAGGTTGAATTTTTTTTAAGAGAGATCGGTATTCTTAAGCATAAGGGAAACAAACTCGTGGAAGATAACAGGCTGATAAAACAGGCCGTGTCTATGACACAAGCATGCATGGATTTAACTGAATTCAATGTCCCTTCCTTCGGTTTGTTTACTGTTCATTCCATAAATTCTCACTTTCTTCTTGCGCCAAAGGATTTTTCATGGCACATAACTGTCAACTACTGCACCTGA 651 0.4147 MVRRKIPIKKIDDVTARQVTFSKRKTGLFKKARELSLLCDAEIALLVFSPAGKLFDYATSSIQNVIERHILRSEVNLDKLDQACPKEQVRCSYANLNKDFGDRTREMRQLNGEELQGLTLRELQKLEERLDSSLIRVSKAKVEFFLREIGILKHKGNKLVEDNRLIKQAVSMTQACMDLTEFNVPSFGLFTVHSINSHFLLAPKDFSWHITVNYCT 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1995 216 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 197 - -
Aed4g1995 216 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aed4g1995 216 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aed4g1995 216 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed4g1995 216 Pfam K-box region 87 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed4g1995 216 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aed4g1995 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aed4g1995 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aed4g1995 216 Coils Coil 123 143 - -
Aed4g1995 216 PANTHER - 1 197 - -
Aed4g1995 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aed4g1995 216 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aed4g1995 216 CDD MADS_MEF2_like 3 69 IPR033896 GO:0000977|GO:0045944
Aed4g1995 216 Gene3D - 14 82 IPR036879 GO:0003677|GO:0046983
Aed4g1995 216 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1995 Aed-Chr4 23470243 23474145 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1995 1 198 MADS-box Gene Family AT2G22540 45.000 1.79e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aed4g1995 K-box 2.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1995 - - gsj:114374895 285.419