Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1958 ATGTTCGTCGGAGGAATTTTCCGGTACGGTTCTCCCACTACTCTGTTATTGTTATTCCTCTGCCTCGTTGCTTCCACCCTCTCAGATGAGCTTCCACCACTCATGAAGTTCAAGTCCTCTATCCATAGTTCCAATGCAAATGTTTTCAGTTCATGGACACAAGCAAATTCTCCCTGCCAATTCACCGGGATTGTATGCAATTCCAAAGGTTTTGTTTCAGAAATCAACCTTCGGGAGCAACACCTGGATGGTACTGTTCCTTTTGATTCACTCTGCGAGCTTCAATCGCTTGAGAAGATATCTTTGGGGTCCAACGTCTACTTGCATGGCAGCATCAGTGAGGGGTTGAGGAAGTGCACCAACTTGAAGCACTTGGACTTGGGTAACAATTCATTCACTGGAGCAGTGCCTGATTTGTCAAGTTTGCACAAGTTGGAGTTGTTGAATTTAAACTCCAGTGGAATTTCTGGGGCGTTTCCGTGGAAATCATTGGAAAATCTAACTAGTCTCGAGTTCCTTAGTCTTGGGGATAACCTATTGGAGGAATCTCCTTTCCCCTTGGAGGTCTTAAAGCTTGAAAATTTGTATTGGCTATACCTCACAAATTGCAGCATCACTGGGAATATTCCATTGGGGATTGGGAATCTCACTCGGCTTCGGAATCTTGAGCTTTCTGACAACCATTTGTCTGGTGAGATTCCAGCTGATATTGTAAAGCTTCAGAGGCTGTGGCAGCTTGAGTTATATGATAACTATTTGAGTGGGAAAATCCCAGTTGGATTTGGCAACCTTACAAGTCTTGTTAACTTTGATGCTTCTTATAATCATCTTGAAGGTGATCTTTCTGAACTAAGGTCCTTGACAAACCTTGCCTCCCTTCAGCTTTTTGGGAACAAGTTCTCAGGAGAAATTCCAAAGGAGATTGGAGATCTCAAGAATCTCACAGAACTTTCTCTTTATGATAACAACCTCACTGGCCATCTTCCTCAACGGCTTGGTTCATGGGTAGGCATGAAATACATTGATGTTTCAGACAATTCTCTTGCTGGTCCTATACCACCTCACTTGTGCAAGAACAACCGAATGGAAGAACTAGAACTCTTGAACAACAGCTTCAGTGGCACAATACCAGAAACATATGTAAAGTGCACATCTTTGGCTCGTATTCGCCTAAGCAGGAATTCACTTTCGGGTGTTGTTCCTTCGGGCATATGGGGCTTGCCGAATTTGGAACTTATTGATCTTGCAATGAACCAGTTTGAAGGTCCAGTGACATCTGATATTGCCAAAGCAAAATCTCTGGCTCAACTGTTGTTACCTAACAACAAGTTCTCAGGTGAGTTGCCATTGGAAATCACAGAAGCTTCTTCACTGGTGTCAATTCAGCTAAGTTCAAATCAATTTTCTGGTCACATCCCGGAAACCATTGGCAAGTTGAAGAAACTAAGTAGTCTTACTTTGAATGGGAACAATCTCTCTGGTTTTGTACCAGATTCCATTGGTTTTTGTACTTCTCTTAATGAGATAAACATTGCAGGTAACTCTCTTTCTGGAGCTATACCAGCTAGCATTGGTTCTCTTCCAACCCTCAATTCATTGAACTTGTCCTCAAACAGGCTTTCTGGTGTAATTCCATCTAGTTTATCATCTATGAGACTTAGCCTTCTTGACTTATCAAACAACCAGTTGTTTGGCTCCATACCAGAACCACTGGCTATTTCAGCCTTCAAAGATGGGTTCATGGGAAACCCTGGCTTATGCAGCCAGACTTTAAAAGGTTTCAGACCATGTCCCACGGAATCTAGCAGTTCCAGGCGACTCAGAAACCTATTAGTCTGTTTCACTGCTGTTGTAATGGTTCTGCTTGGAGCATGTTTCCTTTTCACAAAACTAAGGCAGAACAAGTTTGAGAAGCCACTGAAGACTACTTCCTGGAATGTCAAGCAGTACCATGTGCTAAACTTAAATGAGAATGAAATAGTTGATGGCATCAAGGTGGAGAATTTGATTGGAAAAGGAGGATCGGGGAATGTTTACAGGGTTGTGCTTAAAAGTGGGGCAGAATTTGCAGTGAAACATATATGGACTTCAAATCTAAGTGAGAGGGGAAGTTGTAGGAGCACCTCATCTATGCTAAGAAAGAGTTCAAGGTCACCTGAGTTTGATGCAGAAGTTGCCACTCTTAGCTCTATAAGGCATGTGAATGTGGTGAAGCTGTTTTGTAGCATCACAAGTGAAGATAGCAGTTTGCTTGTTTATGAGTTTCTACCAAATGGAAGCTTAGAAGATGCTCTTGAATTGGTGGATCCAACCATTGCAAAGCATTTCAAAGAGGATGCCATGAAGGTGTTGAAAATCGCAACACTATGCACGGGGAAAATTCCAACTTCAAGACCCTCAATGAGAATGTTGGTTCAAATGCTGGAAGAGGCAGATCCATTTACCACAACCAAAATTATTGTGACCATTGATGCTTAA 2478 0.4229 MFVGGIFRYGSPTTLLLLFLCLVASTLSDELPPLMKFKSSIHSSNANVFSSWTQANSPCQFTGIVCNSKGFVSEINLREQHLDGTVPFDSLCELQSLEKISLGSNVYLHGSISEGLRKCTNLKHLDLGNNSFTGAVPDLSSLHKLELLNLNSSGISGAFPWKSLENLTSLEFLSLGDNLLEESPFPLEVLKLENLYWLYLTNCSITGNIPLGIGNLTRLRNLELSDNHLSGEIPADIVKLQRLWQLELYDNYLSGKIPVGFGNLTSLVNFDASYNHLEGDLSELRSLTNLASLQLFGNKFSGEIPKEIGDLKNLTELSLYDNNLTGHLPQRLGSWVGMKYIDVSDNSLAGPIPPHLCKNNRMEELELLNNSFSGTIPETYVKCTSLARIRLSRNSLSGVVPSGIWGLPNLELIDLAMNQFEGPVTSDIAKAKSLAQLLLPNNKFSGELPLEITEASSLVSIQLSSNQFSGHIPETIGKLKKLSSLTLNGNNLSGFVPDSIGFCTSLNEINIAGNSLSGAIPASIGSLPTLNSLNLSSNRLSGVIPSSLSSMRLSLLDLSNNQLFGSIPEPLAISAFKDGFMGNPGLCSQTLKGFRPCPTESSSSRRLRNLLVCFTAVVMVLLGACFLFTKLRQNKFEKPLKTTSWNVKQYHVLNLNENEIVDGIKVENLIGKGGSGNVYRVVLKSGAEFAVKHIWTSNLSERGSCRSTSSMLRKSSRSPEFDAEVATLSSIRHVNVVKLFCSITSEDSSLLVYEFLPNGSLEDALELVDPTIAKHFKEDAMKVLKIATLCTGKIPTSRPSMRMLVQMLEEADPFTTTKIIVTIDA 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1958 825 ProSiteProfiles Leucine-rich repeat profile. 121 143 IPR001611 GO:0005515
Aed4g1958 825 SUPERFAMILY L domain-like 25 243 - -
Aed4g1958 825 Pfam Leucine rich repeat 505 563 IPR001611 GO:0005515
Aed4g1958 825 Pfam Leucine rich repeat 362 420 IPR001611 GO:0005515
Aed4g1958 825 Gene3D Ribonuclease Inhibitor 363 472 IPR032675 -
Aed4g1958 825 PANTHER RECEPTOR-LIKE PROTEIN KINASE HAIKU2 14 765 - -
Aed4g1958 825 SUPERFAMILY L domain-like 351 569 - -
Aed4g1958 825 PANTHER RECEPTOR-LIKE PROTEIN KINASE HAIKU2 762 818 - -
Aed4g1958 825 Gene3D Ribonuclease Inhibitor 473 599 IPR032675 -
Aed4g1958 825 Gene3D Ribonuclease Inhibitor 187 282 IPR032675 -
Aed4g1958 825 SUPERFAMILY Protein kinase-like (PK-like) 648 765 IPR011009 -
Aed4g1958 825 Pfam Leucine rich repeat N-terminal domain 34 67 IPR013210 -
Aed4g1958 825 ProSiteProfiles Protein kinase domain profile. 664 825 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g1958 825 SMART LRR_typ_2 119 142 IPR003591 -
Aed4g1958 825 SMART LRR_typ_2 216 240 IPR003591 -
Aed4g1958 825 SMART LRR_typ_2 527 550 IPR003591 -
Aed4g1958 825 SMART LRR_typ_2 311 335 IPR003591 -
Aed4g1958 825 SMART LRR_typ_2 479 502 IPR003591 -
Aed4g1958 825 SMART LRR_typ_2 167 187 IPR003591 -
Aed4g1958 825 SUPERFAMILY L domain-like 190 423 - -
Aed4g1958 825 SMART serkin_6 664 815 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g1958 825 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 762 818 - -
Aed4g1958 825 Gene3D Phosphorylase Kinase; domain 1 646 755 - -
Aed4g1958 825 ProSitePatterns Protein kinases ATP-binding region signature. 670 692 IPR017441 GO:0005524
Aed4g1958 825 Pfam Protein kinase domain 666 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g1958 825 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 14 765 - -
Aed4g1958 825 Gene3D Ribonuclease Inhibitor 27 186 IPR032675 -
Aed4g1958 825 Pfam Leucine Rich Repeat 121 136 IPR001611 GO:0005515
Aed4g1958 825 Gene3D Ribonuclease Inhibitor 283 362 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1958 Aed-Chr4 23269716 23273509 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1958 760 825 Receptor kinase-like Gene Family AT1G09970 40.909 2.96e-12 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Aed4g1958 Pkinase 1.1e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1958 - - gmx:100811489 1302.35