Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1932 ATGGAGTATGAAGATGAAGATTGGCTTAGTGTTACTATGGATGACTTTTCTCTTGCTACTGAAAATAGTTGTAGCAGGCAAATGATGGGTAGGAAGAGGAACTATGATGATGACACCAGAGGATACAAATCAAAGAACCTTGAAACAGAAAGGAGGAGGAGGGAGAAGCTCAGTAGCAGGCTTTTGATTCTGCGCTCTATAGTGCCTATCATAACAAATGCAACCACCTTAACCCTCACTTTCTTACTTTATCCTTCTTTATTTATGAATAAAGCAACAATTGTTGAAGATGCTATCACCTACATTGAGAAGCTGCAAGACAAAGTCCAGAGTCTCAGCCAAGAGCTTCACCAAATGGAAGCAATTTCAGAGGAAACAGCAGAGACAAAAATAGTTGAAATTGATGCTGCTGAAGATATGAAGAATTGGGGGATACAGGAAGAGGTCAGAGTGGCGCAAATAAACGAGAATAAACTCTGGGTTAAGATCATTATTGAGAAGAAGAAGGAAAGATTCAGCAAATTGATGGAGGCCCTTAGTAATTTTGGCATTGAGCTCATTGACACCAATCTCACAACCACAAAAGGAGCCTTGCTGATTACATGCTGCATAAAGGACAAGAATGGTGAAATACTTGAAATTCATCAAACCAAGAATTTGTTGCAAGCTATTATTAATGACATATAG 687 0.3886 MEYEDEDWLSVTMDDFSLATENSCSRQMMGRKRNYDDDTRGYKSKNLETERRRREKLSSRLLILRSIVPIITNATTLTLTFLLYPSLFMNKATIVEDAITYIEKLQDKVQSLSQELHQMEAISEETAETKIVEIDAAEDMKNWGIQEEVRVAQINENKLWVKIIIEKKKERFSKLMEALSNFGIELIDTNLTTTKGALLITCCIKDKNGEILEIHQTKNLLQAIINDI 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1932 228 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 41 105 IPR011598 GO:0046983
Aed4g1932 228 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 41 120 IPR036638 GO:0046983
Aed4g1932 228 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 9 228 - -
Aed4g1932 228 SMART finulus 47 111 IPR011598 GO:0046983
Aed4g1932 228 Gene3D - 34 121 IPR036638 GO:0046983
Aed4g1932 228 Coils Coil 95 122 - -
Aed4g1932 228 Pfam Helix-loop-helix DNA-binding domain 44 106 IPR011598 GO:0046983
Aed4g1932 228 PANTHER TRANSCRIPTION FACTOR DYT1 9 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1932 Aed-Chr4 23150212 23151308 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1932 42 225 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 44.271 1.86e-42 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed4g1932 HLH 6.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1932 - - gmx:100793107 317.775