Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1926 ATGGCTGAGGAGTTTCAAGCTGCTATTTGTGGTGAAAGTTGGTGGAATAATATTAATCCAACAAGGAGTGTGTTTCCTCTTATGTCATCAACTTGTTCTGTGGCAGCAGCTGATGCAGGAAACTACAGCACTTGGCAAAGTACTGATTTCGTAGATTTGAAGACTAATAATAACTTGGTTTCTTCTGATACTTGTCTGAGTTTTCTTGATGCTGAGAAGCCACAGCAGAGAGACTCAGCTAGTGGAACAGCTGATAGCATCTTGATGGATTCCACCTTACAAATGATGGGTTTTGGCATGTCATCTTCAACTTCATCCAATTGGAATCAATCTTTATTAGGGAGCGGTTTTCATTCTGTGATTCAGGAAGAAACAGGCATGGATTGTGGTGGTTCTTCCAATAATTCACAAATCCAAAAGGATTGGAGTCCAAAGAATTTCTCATCATCTGGTGGTGGCAGCCAAGTTTCAACCGTTGATGCTTTCAAGCCAATGAACCAAGAATTTTCCTTGGATCAGCAGAGTCTGAATTCAGTTGTTACAAGCACTGGATCATTATCTTGTGGCTTCCCAATTGTTTCAGCCTCCTATGGTTACCCTTCAACGTTGATATATGAGCCTGAGCCTGAGCCTGAGCCTCAACCACAACCACAGAACTCACTTTTCACCAACCCTTCCATGTCCTATTCACCATCTACCGCAAACTACGGAATATGTTCCAATGAACTGTCACCAACATGGTCCAAAGTCTCTTCTCTTCTCAAACCCTCAACGCCACAGCAACAGCTTAGTGGATTGCACTTTTCCAACAATACTCCTTTTTGGAATGCTTCAGCCGAAGCGCTTAATGACATAAGAGCAGGTGTTTTTGCTTCATCACAGCCACAATATCAAACGCCCCCCAATACTACTCTATTAAACAAGCTCAAGAGAGAAGAATCTCCAGAATCATCGGCGAAGAAAAACTCTTCTGAGCCTGCTGCATTCAAGAGGCAAAGAATTGAGACTCCATCTCCATTACCAACTTTTAAGGTTAGGAAAGAAAAGCTGGGGGACCGCATCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACGGACACAGCATCCGTTCTTCACGAAGCCATCGAGTACATCAAGTTCCTTCATGATCAAGTTAGTGTGTTGAGCACTCCATATATGAAAAATGGAGCTCCCATTCAACACCAGCAGGATTGTGATAATGTGAAGGAGTACTCAGAAGGGGCAAAGAAAGATTTGAGAAGCCGAGGGCTGTGTTTGGTGCCGATTTCAAGCACATTCCCGGTGGCTAATGAGACAACAACTGTTGATTTCTGGACGCCTACATTTGGAGTTGCCAATGGCAGCAGGTAG 1377 0.4357 MAEEFQAAICGESWWNNINPTRSVFPLMSSTCSVAAADAGNYSTWQSTDFVDLKTNNNLVSSDTCLSFLDAEKPQQRDSASGTADSILMDSTLQMMGFGMSSSTSSNWNQSLLGSGFHSVIQEETGMDCGGSSNNSQIQKDWSPKNFSSSGGGSQVSTVDAFKPMNQEFSLDQQSLNSVVTSTGSLSCGFPIVSASYGYPSTLIYEPEPEPEPQPQPQNSLFTNPSMSYSPSTANYGICSNELSPTWSKVSSLLKPSTPQQQLSGLHFSNNTPFWNASAEALNDIRAGVFASSQPQYQTPPNTTLLNKLKREESPESSAKKNSSEPAAFKRQRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVSVLSTPYMKNGAPIQHQQDCDNVKEYSEGAKKDLRSRGLCLVPISSTFPVANETTTVDFWTPTFGVANGSR 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1926 458 MobiDBLite consensus disorder prediction 204 227 - -
Aed4g1926 458 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 344 401 IPR036638 GO:0046983
Aed4g1926 458 CDD bHLH_AtbHLH_like 340 391 IPR045239 -
Aed4g1926 458 MobiDBLite consensus disorder prediction 293 308 - -
Aed4g1926 458 PANTHER TRANSCRIPTION FACTOR BHLH123 56 445 - -
Aed4g1926 458 MobiDBLite consensus disorder prediction 129 158 - -
Aed4g1926 458 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 56 445 - -
Aed4g1926 458 Gene3D - 344 405 IPR036638 GO:0046983
Aed4g1926 458 MobiDBLite consensus disorder prediction 293 343 - -
Aed4g1926 458 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 334 383 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1926 Aed-Chr4 23122999 23126049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1926 1 455 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 37.447 1.78e-62 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1926 - - gmx:100794682 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1985 10 23964163 23967849 Aed4g1926 4 23122999 23126049 PCT