Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1923 ATGGCGGCTGAGGCTGAACTTCCGGAGCACTTCAAGTGTCCCATTTCCCTGGAAATAATGTCGGACCCTGTCATCCTCTCTTCAGGCCACACCTTCGACCGTTCCTCCATCCAGCGGTGGCTCGACGCCGGGCACCGCACCTGCCCAATTACGAAACTACCCCTCCCTGAACACTCTTCCCCTCTCATTCCCAACCACGCCCTCCGAAGCCTCATCTCCAACTACGCCCCCATCAACCCTCTTAATCATTATCATTCACACCCTCAAACTCTAATCTCCACCCTGACCTCTCCCACCTCCCCTCTCCCCTCAAAACTCGACGCGCTCCACCACCTCACACGCCTCTCCCACTCCGACTCCCTATTCCGCCGCCGCCTCTCCGACTCCCCGGCCCTCCTCCCAGCCCTCCTAGCCTGCCTCCAAGATAGCTCCGACCTCCGGCAACGCGCCCTCTCCCTCCTCCTCCACCTCTCCCTCGACGACCACGCCAAGGTCGGCCTCGTCGCCGAGGGAGTCCTCTCCCAACTAATAACCCTCCTCCTCTCCGCCCCTTCCGACTGCCGCGCCCTCGCCGCCACCCTCCTCACCAGCCTCGCCGTCCTCCACGTCAACAAGGCCACCATCGGAGCCTTCCCCCGCGCCATCCACGCCCTCGTCACCCTCCTCCGCGACGGCAAGGGCAGAGAGAAAAAAGAAGCCGCCACCGCGCTATACGCCATCTGCTCATTCCCCGATAACCGGCATAAAGCGGTGGAGTGTGGCGCCGTTCCCGTCCTGCTTCGGAGCGCCGATTCCGGGCTTGAGAGGAGCGTAGAGGTGATCGGGGTGTTGGCGAAGTGCAAAGAGGGGAGAGAGCAGATGGAACGGTTTGGTGGGTGCGTGCAGATTCTGACGCGCGTGTTGAGGAATGGAAGCTCCAGGGGAGTTCAGTATGCTCTTATGGCTCTCTATTCACTCTGTTGTCACAGCGAAGACACTGTTCTCGAGGCTTTAAGAAATGGGGTTTTCGAAATTTGTCAAGGCTTGCTCCTAGTCCTGGATGACAATGCCAAGATCAGAAGGAATGCCCTCTGTTTGCTTCAGCTTCTCCGTGGGAACACCCATCGCTTGCCTTGA 1116 0.5986 MAAEAELPEHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITKLPLPEHSSPLIPNHALRSLISNYAPINPLNHYHSHPQTLISTLTSPTSPLPSKLDALHHLTRLSHSDSLFRRRLSDSPALLPALLACLQDSSDLRQRALSLLLHLSLDDHAKVGLVAEGVLSQLITLLLSAPSDCRALAATLLTSLAVLHVNKATIGAFPRAIHALVTLLRDGKGREKKEAATALYAICSFPDNRHKAVECGAVPVLLRSADSGLERSVEVIGVLAKCKEGREQMERFGGCVQILTRVLRNGSSRGVQYALMALYSLCCHSEDTVLEALRNGVFEICQGLLLVLDDNAKIRRNALCLLQLLRGNTHRLP 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1923 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 77 IPR013083 -
Aed4g1923 371 SMART Ubox_2 10 75 IPR003613 GO:0004842|GO:0016567
Aed4g1923 371 Pfam U-box domain 8 75 IPR003613 GO:0004842|GO:0016567
Aed4g1923 371 SUPERFAMILY RING/U-box 5 78 - -
Aed4g1923 371 SUPERFAMILY ARM repeat 89 363 IPR016024 -
Aed4g1923 371 ProSiteProfiles U-box domain profile. 6 82 IPR003613 GO:0004842|GO:0016567
Aed4g1923 371 PANTHER U BOX DOMAIN-CONTAINING 1 370 - -
Aed4g1923 371 CDD RING-Ubox_PUB 11 52 IPR045210 -
Aed4g1923 371 Gene3D - 89 370 IPR011989 -
Aed4g1923 371 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1923 Aed-Chr4 23110143 23111258 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1923 6 365 U-box Gene Family AT4G21350 56.334 4.56e-133 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1923 - - gmx:100796272 573.933