Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1922 ATGAAGAAAGTTATCATTATTTTTGCTCTTGCTTGTCTATCAATCCTTCGGAAAACATCATATGCAGCTGATGTCTTGACTCCAACATCTTCAATTAAAGATGGCCAGGAACTCATTTCTGCTGGACAAATTTTTTCTCTCGGATTCTTCACTCCTGGAACCTCCAAAAGGCACTACATAGGAATATGGTACAAGAATATTGTGCCTCAAACCATAGTTTGGGTAGCAAACAGAGATAATCCACTTAATGACACAAGTAACAGAATATGGTTTACAAATTCATCAAGATCAATTAAAGAACCAATTGCCAAGCTAAGTGGAATTTGGGATGGGATCCGTCTTAATTCAGATGATTGGTTATCATTTATTGAAATTACAGCCTTCAAGCCACAACTTTCAGTAACTAGAAATGAGGCAGTGTACTGGGATGAACCAGGAGATAGATTGTCAAGGTTTGTGATGAGGGATGATGGAATGCTTCAAAGATATATTTGGGACAACAAAAATCTTAAGTGGACTCAGATGTATGAGGCAAGAAAAGACTTTTGTGACAACTATGGAACATGTGGAGTGAATGGTGTTTGCAATATTAAGGATGTGCCAGCTTACTGTGATTGCTTGACAGGCTTCATACCAAATTCACAGGAAGAATGGGATTCATTTAATTGGTCTGAGTCCAGTGAAAATGCTAGTAACAGGAGAAAGATAGCACTGATTATTTCGGTTCCTGTGGCACTTCTTATTTTGTGTATTATCTTCTACCTTTCAATTAAGTATATAAAACGGAGGAGGAGCACTACTGATTTGGCTAGAGCGGTAGGACCAAATTACTATCAGACTAGAAATGGTTATATGTCCCCTGAGTATGCAATAAATGGGCTTCTTTCTGTGAAGTCTGATGTATTTAGCTTCGGAGTTATAGTGTTAGAGATATTAAGTGGCATCAGAAATAACTTCAAAGTCAAACATCCAGTTCAGGACCATAATCTGTTGGGGCAGGTAACCAAAACCAACCACATGCATGCAATGCAATATTGA 1038 0.3796 MKKVIIIFALACLSILRKTSYAADVLTPTSSIKDGQELISAGQIFSLGFFTPGTSKRHYIGIWYKNIVPQTIVWVANRDNPLNDTSNRIWFTNSSRSIKEPIAKLSGIWDGIRLNSDDWLSFIEITAFKPQLSVTRNEAVYWDEPGDRLSRFVMRDDGMLQRYIWDNKNLKWTQMYEARKDFCDNYGTCGVNGVCNIKDVPAYCDCLTGFIPNSQEEWDSFNWSESSENASNRRKIALIISVPVALLILCIIFYLSIKYIKRRRSTTDLARAVGPNYYQTRNGYMSPEYAINGLLSVKSDVFSFGVIVLEILSGIRNNFKVKHPVQDHNLLGQVTKTNHMHAMQY 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1922 345 Pfam S-locus glycoprotein domain 106 213 IPR000858 GO:0048544
Aed4g1922 345 Gene3D Transferase(Phosphotransferase) domain 1 253 344 - -
Aed4g1922 345 SUPERFAMILY alpha-D-mannose-specific plant lectins 58 93 IPR036426 -
Aed4g1922 345 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 282 334 - -
Aed4g1922 345 ProSiteProfiles Bulb-type lectin domain profile. 23 154 IPR001480 -
Aed4g1922 345 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 226 271 - -
Aed4g1922 345 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 8 90 - -
Aed4g1922 345 SMART blect_4 29 125 IPR001480 -
Aed4g1922 345 SUPERFAMILY Protein kinase-like (PK-like) 280 319 IPR011009 -
Aed4g1922 345 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 282 334 - -
Aed4g1922 345 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 105 224 - -
Aed4g1922 345 Gene3D - 18 105 IPR036426 -
Aed4g1922 345 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 105 224 - -
Aed4g1922 345 Pfam Protein tyrosine and serine/threonine kinase 282 339 IPR001245 GO:0004672|GO:0006468
Aed4g1922 345 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 8 90 - -
Aed4g1922 345 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 226 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1922 Aed-Chr4 23101711 23104816 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1922 283 318 Receptor kinase-like Gene Family AT4G23230 75.000 9.36e-11 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Aed4g1922 S_locus_glycop 4.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1922 - - gmx:102669607 247.669