Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1906 ATGGGGAAAAAATCGAGTCTGGCGGAGGGAGGAGAAGTGGTGCCGGAGCAGCTGCGGTGCAGCCGTACCGACGGGCGGCAATGGCGGTGCCGGCGGCGAGTGATGGAAAACCTAAAGCTGTGCGAGATTCACTATCTGCAAGCTCGGCGTCGGCAGCAGAAGCAGAAGGTTCAGGAGTCGCTGAAGCTTAAGAGAAAGAGGCAAAACGACGTCGTTGAGGTTCAGATTGGGGCCAAGCGGGACCGAAAATCGAGAGAGGCATTGGTCAATAGGAGGAACCAATTGGAGCTAATAAGGATGGTTCTGCAGAGAGAGTTTGAGAAGAAGAAGAAGAAGGAATTGCAATTGAGTTTGGATTCGCATTTGCATTCGCATTCGCATTCCAATCACGACTTGAAGAAGGAACTGCCGAATGGGGTTATGGCTATTGCGTCCAATGTGGCTTCTTCTCGTTACTTCAGGTCCAAGAATGCTGAGAGGGGCTCTGTTAGTAACTTGAAGGATGTGCAGTGTGGACGAAACATGAAGAAGGGGAGGAGGAAGAAGTGTCATTGGTGTCAGAGAAGTGATTCTTGGAGTCTGATAAGGTGTTCAAGCTGCCAGAGAGAATTTTTCTGCATGGACTGCATTAAACAACGGTATTTTGATACTCAAAATGAGGTTAAGATGGCATGCCCAGTTTGTCGACAAACTTGCACCTGTAAAGATTGCTTGGCAAGTCAATACAAAGACAGTGAAAGTAAGGAATATTTGGCTGGTAAAAGCAGAGTTGATAGGATATTGCATTTTCATTATTTGGTATGTATGCTCCTTCCTGTTCTAAAACAAATAAAAGAAGACCATCCTGTGGACGTAGAAAAAACAGCAAAAATTAAAGGTGGGAAAAGAATTTCTGATATTCTCATCAAGCCAGTCGATTTTGACTGCAACGAGAAAAATTACTGCAATTACTGCAAAACACCCATAAGCTGCCTTAGTTGTTCTCAAGCATTAAGTCAAGGAAGCACATCTGAAGAAATCATTTCTTCTATATCCAAGCTACCTGACAAAGTAAATGCATGCATTTCTAGTGAAAGTCACCTTTTGGATGATAAGGTCATTTCTAATGGCAATTTAACTGATACCTCAATGTTACCTGAGTGGACAAATTGTAATGGTACTGACATTGTGTCATGCCTGCCTACAAAGCTTGGTGATTGTGATGATAGCCACCTTGATTTGGAATATGTCTTTCCTTTAAGTTGGATCAAAGAAATAGAAGTAAAGGCAGAAGAAATAGTTTGCAGCTATGACTTTCCTGAAACTTTGGATAAAAGTTCAAGCTGTTCACTGTGTGTTGACAAAGATCATAAAACTAGCAGATACAAGCAGTTACAGGAAGCGGCTCAAAGAGAAGATTCTCGTGATAACTACTTATTTTTCCCTACAATTTTGGACATCAGTTGCAATCATTTTGAACACTTTCAGAAACACTGGGGAAAAGGCCATCCTGTAGTTGTGCAAGATGTGCTCCAAAGTACACCAAACCTTAGCTGGGATCCACTGTTCATGTTCTGTACTTATCTTGAGAGGAGCATGACAAGATATGAGAATAATAAGGACTTACTTGAAGCTTGTTTGGATTGGTTTGAGGTGGAGATTAACGTTAGGCAGTACTTTACTGGGTCTCTTACATATCAACCTCAGAAAAATACTTGGCATGAGATGCTGAAACTTAAAGGATGGTTGTCTTCCCAAGTATTCAAAGAACAGTTTCCTGCTCATTTTGCTGAAGTAATTGATGCTCTTCCAATTCAAGAATACATGAATCCCTTGTCTGGTCTTCTGAATTTAGCTGCAAATTTGCCACAGGGGAGTACAAAACATGACATAGGACCTTATGTTTATATTTCATATGGCTGTGCTGACGAAGAAGCTGATTCCGTTACAAACCTCTGTTACATCTCATCTGATATGGTTAATATTATGGCACATTCCATGGACATCCCTCTCTCTACAGATCAGCTTGCTAAAATAAGGAAGTTGTTGAAAAAACACAAAGCTCTATGTCAGAAGGTGTCATCTAAAACTACTAGTGAGCATTCAGAAGACAGGGAACAAAATGAAATGCATAGTATGGTAAGAGAAGAGACTGACTTTCTAAGGAGAGTCAATAGAACATCTTCCATATCTACTGAAGCCAAAACAATATCTAATCAGAAGTTAGATACCAATATTTCTGGTGACGAAGAATGTGGTTCCGATTGTGAAACTGAAAAGACACAAAGCTCTTTACCTTTCCACAGGAGAGTTCTAAGCACTGACATGTCTCCAGATCATAATCCTAGAAATCCCTTTGAAAACTCAAACAGTGATAAAAGGAAGAAGTTTACAGAGAATTCTGGTGCTCGTTGGGATGTCTTTCGAAGACAGGATGTGCCCAAGCTCTTAGAATACCTCAAAAGACACTCTAATGAATTTTCTTATACTAGTGAACATCACGAGAAGATGGTTCATCCAATTCTGGATCAGAGCTTCTTTCTTGACAATACTCACAAGATGAGACTAAAGGAGGAGTTTGAAATTGAACCATGGACTTTTGAGCAACATGTTGGAGAAGCTGTCATCATTCCTTCTGGATGTCCATACCAGATTAGGAATCCTAAGTGTTGTGTACATGTGGAATTGGAATTTGTGTCCCCTGAGAATGTCTCTGAGTCTATCCAATTGATTGATGAGATCCAGCTGCTTCCAGAAGACCATAAAGCAAAAGTAGAAAAGCTGGAGGTGAGAAAAATGGTCCTTTATAGCATGAGTACAGCAATAAAAGAAATACGTGAGCTTACATGCAAAACATGA 2838 0.408 MGKKSSLAEGGEVVPEQLRCSRTDGRQWRCRRRVMENLKLCEIHYLQARRRQQKQKVQESLKLKRKRQNDVVEVQIGAKRDRKSREALVNRRNQLELIRMVLQREFEKKKKKELQLSLDSHLHSHSHSNHDLKKELPNGVMAIASNVASSRYFRSKNAERGSVSNLKDVQCGRNMKKGRRKKCHWCQRSDSWSLIRCSSCQREFFCMDCIKQRYFDTQNEVKMACPVCRQTCTCKDCLASQYKDSESKEYLAGKSRVDRILHFHYLVCMLLPVLKQIKEDHPVDVEKTAKIKGGKRISDILIKPVDFDCNEKNYCNYCKTPISCLSCSQALSQGSTSEEIISSISKLPDKVNACISSESHLLDDKVISNGNLTDTSMLPEWTNCNGTDIVSCLPTKLGDCDDSHLDLEYVFPLSWIKEIEVKAEEIVCSYDFPETLDKSSSCSLCVDKDHKTSRYKQLQEAAQREDSRDNYLFFPTILDISCNHFEHFQKHWGKGHPVVVQDVLQSTPNLSWDPLFMFCTYLERSMTRYENNKDLLEACLDWFEVEINVRQYFTGSLTYQPQKNTWHEMLKLKGWLSSQVFKEQFPAHFAEVIDALPIQEYMNPLSGLLNLAANLPQGSTKHDIGPYVYISYGCADEEADSVTNLCYISSDMVNIMAHSMDIPLSTDQLAKIRKLLKKHKALCQKVSSKTTSEHSEDREQNEMHSMVREETDFLRRVNRTSSISTEAKTISNQKLDTNISGDEECGSDCETEKTQSSLPFHRRVLSTDMSPDHNPRNPFENSNSDKRKKFTENSGARWDVFRRQDVPKLLEYLKRHSNEFSYTSEHHEKMVHPILDQSFFLDNTHKMRLKEEFEIEPWTFEQHVGEAVIIPSGCPYQIRNPKCCVHVELEFVSPENVSESIQLIDEIQLLPEDHKAKVEKLEVRKMVLYSMSTAIKEIRELTCKT 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1906 945 Coils Coil 85 105 - -
Aed4g1906 945 SMART cupin_9 585 908 IPR003347 -
Aed4g1906 945 PANTHER PROTEIN B160 12 944 - -
Aed4g1906 945 SUPERFAMILY Clavaminate synthase-like 477 927 - -
Aed4g1906 945 MobiDBLite consensus disorder prediction 690 705 - -
Aed4g1906 945 Pfam JmjC domain, hydroxylase 795 891 IPR003347 -
Aed4g1906 945 MobiDBLite consensus disorder prediction 738 790 - -
Aed4g1906 945 ProSiteProfiles Zinc finger RING-type profile. 183 229 IPR001841 -
Aed4g1906 945 MobiDBLite consensus disorder prediction 686 705 - -
Aed4g1906 945 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 12 944 IPR045109 GO:0032454|GO:0033169
Aed4g1906 945 Pfam WRC 15 56 IPR014977 -
Aed4g1906 945 ProSiteProfiles WRC domain profile. 14 59 IPR014977 -
Aed4g1906 945 ProSiteProfiles JmjC domain profile. 604 908 IPR003347 -
Aed4g1906 945 Gene3D Cupin 477 917 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1906 Aed-Chr4 23009681 23016302 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1906 10 54 GRF Transcription Factor Family AT2G22840 46.667 3.85e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Aed4g1906 JmjC 1.7e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1906 K15601 - gmx:100802129 1652.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1972 10 23898001 23904078 Aed4g1906 4 23009681 23016302 PCT