Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1904 ATGGGGAGAGCACCTTGTTGTGATAACAAGAACGGCCTCAAGAAAGGGCCATGGACAACCGAGGAGGACCAGAAACTGATTCATTACATTCAGAAACATGGATATGGCAATTGGAGGACACTCCCAAAGAATGCTGGGTTGCAAAGATGTGGAAAGAGTTGCCGTCTCCGTTGGACAAACTATCTGCGACCTGATATCAAGCGAGGACGGTTTACATTTGAAGAGGAAGAGACAATAATTCAACTACATAGTATTCTTGGCAACAAGTGGTCTGCGATTGCATCTCGGTTACCAGGAAGGACAGACAATGAAATAAAGAACTACTGGAACACTCACATTAGAAAAAGGCTTCTGAGGATGGGAATTGACCCTGTCACACACACTCCTCGGCTTGATCTATTGGACATCTCTTCCATTCTCAACGCATCACAAAGTCTCTTTGGCATGCACCACTACATGGTCAACCCGGAGCTTTTAAAATTGGCTTCTTCACTCATCTCATCCACCTCACAGCAACACATGTGTGCCCAACAGAACCAGCTTCATGTTCCGCAGTTTGTCCAATTTCAAGATCCAGTTCAAGAAATTCCTGAAGCATGCAGCACCCTTTGTGTTTCATTGCCTCTAACTCATCAACCACACTTGGTTGACCAATATCCATCATCAACTAATTTCACAGACTTCAGTACTTTCCAACATGATGATCAGTTAAGTGATTGGCACAAAGATGGGATTGCGTTAACAGATGATTATATCCCTCCCTTATCCTATAATTATTATAGTACTCCAAATCTCATGTATCCTCATCAATTGTCCGAACCACCGTCGACTTTTTATTCCAACAACAGCAATCAGAACTTCGGCTTCGCTTCAGTTCTGTCGACACCTTCGTCAAGCCCCACACCGCTGAATTCCAACTCCACGATAATCAATGGGAGTAACACAGAAGACGAGAGAGATCAAACCTATGACGTACAGTAG 981 0.4383 MGRAPCCDNKNGLKKGPWTTEEDQKLIHYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFTFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHTPRLDLLDISSILNASQSLFGMHHYMVNPELLKLASSLISSTSQQHMCAQQNQLHVPQFVQFQDPVQEIPEACSTLCVSLPLTHQPHLVDQYPSSTNFTDFSTFQHDDQLSDWHKDGIALTDDYIPPLSYNYYSTPNLMYPHQLSEPPSTFYSNNSNQNFGFASVLSTPSSSPTPLNSNSTIINGSNTEDERDQTYDVQ 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1904 326 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 323 - -
Aed4g1904 326 SMART sant 14 64 IPR001005 -
Aed4g1904 326 SMART sant 67 115 IPR001005 -
Aed4g1904 326 PANTHER TRANSCRIPTION FACTOR MYB41 1 323 - -
Aed4g1904 326 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Aed4g1904 326 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Aed4g1904 326 MobiDBLite consensus disorder prediction 292 326 - -
Aed4g1904 326 MobiDBLite consensus disorder prediction 292 316 - -
Aed4g1904 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Aed4g1904 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Aed4g1904 326 CDD SANT 70 113 IPR001005 -
Aed4g1904 326 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Aed4g1904 326 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Aed4g1904 326 CDD SANT 17 62 IPR001005 -
Aed4g1904 326 Gene3D - 14 67 - -
Aed4g1904 326 Gene3D - 70 117 - -
Aed4g1904 326 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1904 Aed-Chr4 22990235 22991775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1904 1 176 MYB Transcription Factor Family AT4G21440 73.196 3.63e-101 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed4g1904 Myb_DNA-binding 1.4e-15 CL0123