Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1900 ATGAAATCTAAGGATAAGATAGATCTGAAGTCAGAACCACATTACATTCTCTCTCTCTCTTCTCCGAAACGAAATGGGTGGTTTGCTCTGACTCTGAGAACCGAAATGGGTGACGAACAACCGTCGACCACCGCCGTCTCCGGTCTCCGGCGAGTGATTGCGCTCATCTCTTCCTTGATCTCCCTCACCCTCTCGATCAGAGTCTTCGCCGGAAAGTGGCAACTGATTCGGAGTAGGCTGGAGGAGCTCCACTCGGCCCTCGTCGCCGGCGATGCCAGGTCCCTCTCCGGCGAGCTCCCGGCGATAACGGGCACGGCGGAGGAGTGCCACGAGCTGGCGCGGCGATGCGTGGATCTGTCCTACAGCGGGAAGCTTCTGATGCAGAGCGATTTGGACGTGACGTTGGGGAAGTTGGAAACTCACGTGAAGAAGCTATCTGAGATATTCAAGAAGGGTGTGTCGATGCATGGCTATGCTGTGGTGGTTTCAAGGCCTTGTTTTGGAGCTTGCAAAGATGACATGAGGTTCTACCTAAGGGACTTATTGACGAGAATGAAGGTTGGTGATTTGGTTATGAAGAAGCAAGCTTTGCTGAACTTGCATGAGGTGGTTGTGGAGGATGACAAGTATGTCAAGTTGGTTGTTGAGGTTTCTGAGTTTGTTCACGCCTTGGTCGATTTTCTAGGTTGCAATGAGATTGAGGTTGTCGAGGAGGCTGCCAAGGTTGTTTCTGTGGTCGCGGGGTTTGATTCCTATAAAGGGGTTTTGGTTGGTGCTGGGGTTATTGCCCCTTTGATTCGCGTTTTGGAATGTGGGAGTGACGTTGGGAAGGTTGGTGCTGCCAGGTGTTTGCAAAGGTTGACCGAGAATTCCGATAATGCGTGGTGTGTTTCGGCTCATGGGGGTGTCACTGCCTTGTTGAGGATTTGTGAGAGTGTTGAGTGTAAAGGGGAATTAGTTGGTCCTGCTTGTGGGGTGTTGAGGAATCTTTGTGGTGTTGAGGAAATCAAGAGGTTTATGGTTGAGGAGGGTGTGGTCTCCACGTTTCTGAGGCTTGTGAGGTCTAAGGATGAAGCGGTTCAGGTGAGTTCTGTTGAGATGATTCAGAACATTGCCTCTGGTGATGACTTGGTTAGGCAGATGGTGGTTAGAGAAGGAGGGGTTCGTGTTCTTTTGCGTGTTTTGGATCCTAAGTGGACTTGTTCCTTGAAAACCAGAGAGGTTGTGATGAGGGCTATTCAGAATTTGTATTTTACATCGCCTAGTTGTGTTAGTGTTTTGCTGAGTTATGGCTTTGTGGATCAATTGATGTATTATGTGAGAAATGGGGAGGTTTTGATTCAGGAGTTGGCTCTGAAGGTGGCGTTCAGATTCTGTGAAACATCGGAGGAGGCTAAGAAGGCGCTGGGTGATGCCGGCTTCATGGCTGAGCTTGTCAAGTTTCTAAATGCGAATTCGTTTGAAGTTCGGGAAATGGCAGCAGAGGCACTCTCCGGGATGGTAATGGTGGCCAAAAATAGGAAGAGGTTTGTGCAGGATGATCAAAACATTGCTCTTCTTCTGCAGTTGCTGGATCCAGGGGAGGGTAATTCAGGTAATAAAAAGTTGTTGATCTCTATCTTGATGTCACTAACAAGTTGCAACAGTGGGAGGAAAAAAATTGTGAGTTCCGGGTATGCCAAAAACATAGAGAGGCTTGCAGATGCTGAGGTTTCTTCTGATGCCAAGAGGCTTGTGAGGAAGCTATCCACCAACCGGTTCCGCAGTATGTTGAGTGGAATCTGGCACTCTTGA 1794 0.4894 MKSKDKIDLKSEPHYILSLSSPKRNGWFALTLRTEMGDEQPSTTAVSGLRRVIALISSLISLTLSIRVFAGKWQLIRSRLEELHSALVAGDARSLSGELPAITGTAEECHELARRCVDLSYSGKLLMQSDLDVTLGKLETHVKKLSEIFKKGVSMHGYAVVVSRPCFGACKDDMRFYLRDLLTRMKVGDLVMKKQALLNLHEVVVEDDKYVKLVVEVSEFVHALVDFLGCNEIEVVEEAAKVVSVVAGFDSYKGVLVGAGVIAPLIRVLECGSDVGKVGAARCLQRLTENSDNAWCVSAHGGVTALLRICESVECKGELVGPACGVLRNLCGVEEIKRFMVEEGVVSTFLRLVRSKDEAVQVSSVEMIQNIASGDDLVRQMVVREGGVRVLLRVLDPKWTCSLKTREVVMRAIQNLYFTSPSCVSVLLSYGFVDQLMYYVRNGEVLIQELALKVAFRFCETSEEAKKALGDAGFMAELVKFLNANSFEVREMAAEALSGMVMVAKNRKRFVQDDQNIALLLQLLDPGEGNSGNKKLLISILMSLTSCNSGRKKIVSSGYAKNIERLADAEVSSDAKRLVRKLSTNRFRSMLSGIWHS 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1900 597 Gene3D - 178 586 IPR011989 -
Aed4g1900 597 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 39 597 - -
Aed4g1900 597 SMART arm_5 333 373 IPR000225 GO:0005515
Aed4g1900 597 SMART arm_5 207 248 IPR000225 GO:0005515
Aed4g1900 597 SMART arm_5 375 418 IPR000225 GO:0005515
Aed4g1900 597 SMART arm_5 290 332 IPR000225 GO:0005515
Aed4g1900 597 SMART arm_5 249 289 IPR000225 GO:0005515
Aed4g1900 597 SMART arm_5 462 502 IPR000225 GO:0005515
Aed4g1900 597 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 301 345 IPR000225 GO:0005515
Aed4g1900 597 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 39 597 - -
Aed4g1900 597 SUPERFAMILY ARM repeat 179 578 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1900 Aed-Chr4 22973358 22975151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1900 161 451 U-box Gene Family AT2G23140 24.242 1.24e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1900 - - gmx:100783537 994.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1966 10 23840531 23842240 Aed4g1900 4 22973358 22975151 PCT