Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1893 ATGGCTTCGTCTTCGTCTTCGGCTTCGTCCTCGAAGATATGCTTCAATTCTGACTGCAAGGAATTGAAGCCCGAAAGACCTAAGAAAGGGTGGAGACTCCGTAGCGGAGAACTAGCCGAGCTTTGTGATCGATGCGGCCATGCTTTTGAAGAAGGGAGGTTCTGTGAGATTTTTCACTCAAATGCTTCTGGTTGGAGGAGTTGTGAGACTTGTCGAAAGCGGATTCATTGTGGGTGTATTGTTTCAAGTGGTGCTTTTATGTTGTTGGATCCTGGAGGAATTGAATGTTATGCATGTGCCCGCAAAAATATTATTTTGCCATCTAACCTGCCATGGCCACAATCGTTTTCTCTTCAAAATCGTTTATCGGATAGACTTAGAGACCTATCTGCCAAAGGTTGGAGTCAGCTAGCTGGATCAGGTCCTGTACCATGGAAGCAAGCACCTAGTCTGTTCAATTCTGCTTCTTCATCTGATCTGATCCCAGAAGTGCCTTCTTTAGTTGAATTATCCAATAGCTTTGACAAAATGTATTGCAATGAAAGATTACCTGCCTCAGCCTTGGAAAAGAAAAATGAGGATTTGTTATCAGTTAACTGGAACGTCAAGCTTGGCTCACGGGAGATGATGCTTATGAATGGAATGAGGAATGAGGACAAGTCAAGTTCATGTTTAAATATGTGTCAACAGCCTTCTTCTCTGAAGGAAGAGTCATCTCCTCAACCGTTTGGTTTGCCTGTACCCAATTCATGCCAAAATGAAAGAAATGGTCAACTTGGGGTAACTGGAAGCCATCCACAACAAACTCCACCACCTCCAGGAAAGCAATTTAATGGCACTATGCATTTAGCACCTGATTCATCAGGTGAGGCTCAGGTTCGCAATGGGCGGCCTCGAGCAGATGCCCGAGGAAGAAACCAGTTACTGCCACGGTACTGGCCAAGGTGTACAGATCTGGAGCTACAGCAAATTACTATAGATTCAAATTCTGTAATTACTCCCTTGTTTCAGAAAACCTTGAGTGCTAGTGATGCTGGGCGAATTGGGCGTTTAGTGCTACCCAAAAGTGTGCTGAGGTTTGTCTTGAGATCCTTCAAGCTTCTAACCCACTTCCCACCAATTTCTCAACCTGAAGGATTGCCTCTTAAAATCCTTGATGCAAAAGGCAAGGAATGGATATTTCAATTTCGCTTCTGGCCAAACAATAACAGCAGAATGTATGTTTTGGAGGGTGTCACTCCATGCATACAGTCCATGCAGTTGCAGGCTGGTGATACTGGTAAGGCATTGTCTCGAAGCCGGTTAGAGCCAGAGGGAAGGTTGGTTATGGGATTTAGAAAGGCTTCATGTGCTGTGCCATCCGATCAGGACAATGAGATCAATAAGACTGGAAATGGATTTTCCTCCCATGGTGAAGTTGAATTGGCAGATCCTAATTCATGGTCTAAAGTTGATAAGTCAGGATACATAGCAAAAGAAGCACTGGGGAGCAAATCATTAATAGCTAGAAAAAGAAAGAGCAGCATATTGGGCTTGAAGAGTAAACGTCTAAGAATTGAAAATGAGGATTTAATAGAGCTCAAGATTACATGGCAAGAAGCTCAAGGTCTGCTCCGGCCCCCTCCTAGTCACATTCCTAGCATTGTGGTGATTGAAGGTTTTGAATTTGAGGAATATGAGGAAGCTCCAGTGCTTGGGAAGCCAACACTTTTTACCAGTGATAATGTGGGTGAAAAGATCCAGTGGGCTCAATGTGAAGACTGTTTCAAGTGGCGCAAATTGCCAGCAAGTGCGCTTCTTCCATCAAAATGGACTTGTTCTGATAATTTGTGGGATCCAGAAAGATCTTCTTGTTCAGCTGCACAAGAGTTGACAGCAGAGCAACTTGAGAATTTGCTACCTGCTTGTAATTCAGCTGTTCCCAAGAAAATGAAGGCCGCCAAACAGGATCCCGATAATGAAGCTTTGGAGGGACTTGACACCCTTGCAAATCTAGCTATCATGGGAGAGGGCGAGGCACTCCCAGCATCTGCCCAGGCCACAACTAAACATCCCCGTCATAGACCTGGCTGCTCTTGCATTGTTTGCATTCAGCCTCCCAGTGGAAAGGGCCCCAAGCATAAGCAGACATGCACATGTAATGTATGCTTAACAGTGAAGCGACGTTTCCGTACCCTTATGTTACGGCGTGAAAAGAAACAATCAGAAAAGGAAGCAGAGACAACTCGTAAAAAGCAACAGCAACAACATCCTCAACCGTTACCTTCATCTGAAATTTTGCTTGATGAAGATTCCTTGCCATGTAGTAACACAGGTGATAGTAGCCCGAACCAGAACAAAGAGGGTGGTGATGGTTCTGATGATGATCCTAACCGAATAAAATCATCTGCTTCGCCATTCAAAGGCCAAATTGACCTCAATATCCAGCCAGAGCGAGAAGAAGAATTATCACCTGGTTCAGATTCTGGCAGCATGATTAAGTTGCTTCATGATGCTACCGAGCAGTATCTCAAGCAGCAGAATGTGAACTCTGCTACTGGAGATTCATCAGGAAGTCAGTCACAGCTGGTAGGAGATGCAATGAGAGAAGATAAACTTAACAACGGTGTTGCCCATGGCAGTAGTAGTCATAATAGTGATAAGGAACATGCCCAATCTTTGTCTATGAATGTGTGA 2676 0.4439 MASSSSSASSSKICFNSDCKELKPERPKKGWRLRSGELAELCDRCGHAFEEGRFCEIFHSNASGWRSCETCRKRIHCGCIVSSGAFMLLDPGGIECYACARKNIILPSNLPWPQSFSLQNRLSDRLRDLSAKGWSQLAGSGPVPWKQAPSLFNSASSSDLIPEVPSLVELSNSFDKMYCNERLPASALEKKNEDLLSVNWNVKLGSREMMLMNGMRNEDKSSSCLNMCQQPSSLKEESSPQPFGLPVPNSCQNERNGQLGVTGSHPQQTPPPPGKQFNGTMHLAPDSSGEAQVRNGRPRADARGRNQLLPRYWPRCTDLELQQITIDSNSVITPLFQKTLSASDAGRIGRLVLPKSVLRFVLRSFKLLTHFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTGKALSRSRLEPEGRLVMGFRKASCAVPSDQDNEINKTGNGFSSHGEVELADPNSWSKVDKSGYIAKEALGSKSLIARKRKSSILGLKSKRLRIENEDLIELKITWQEAQGLLRPPPSHIPSIVVIEGFEFEEYEEAPVLGKPTLFTSDNVGEKIQWAQCEDCFKWRKLPASALLPSKWTCSDNLWDPERSSCSAAQELTAEQLENLLPACNSAVPKKMKAAKQDPDNEALEGLDTLANLAIMGEGEALPASAQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFRTLMLRREKKQSEKEAETTRKKQQQQHPQPLPSSEILLDEDSLPCSNTGDSSPNQNKEGGDGSDDDPNRIKSSASPFKGQIDLNIQPEREEELSPGSDSGSMIKLLHDATEQYLKQQNVNSATGDSSGSQSQLVGDAMREDKLNNGVAHGSSSHNSDKEHAQSLSMNV 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1893 891 MobiDBLite consensus disorder prediction 763 781 - -
Aed4g1893 891 SMART B3_2 336 449 IPR003340 GO:0003677
Aed4g1893 891 MobiDBLite consensus disorder prediction 729 891 - -
Aed4g1893 891 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300-LIKE ISOFORM X1 9 823 - -
Aed4g1893 891 Coils Coil 729 749 - -
Aed4g1893 891 SUPERFAMILY DNA-binding pseudobarrel domain 333 426 IPR015300 -
Aed4g1893 891 Pfam CW-type Zinc Finger 581 623 IPR011124 GO:0008270
Aed4g1893 891 Gene3D - 314 451 IPR015300 -
Aed4g1893 891 MobiDBLite consensus disorder prediction 218 298 - -
Aed4g1893 891 MobiDBLite consensus disorder prediction 869 891 - -
Aed4g1893 891 MobiDBLite consensus disorder prediction 834 857 - -
Aed4g1893 891 Pfam B3 DNA binding domain 336 426 IPR003340 GO:0003677
Aed4g1893 891 MobiDBLite consensus disorder prediction 729 745 - -
Aed4g1893 891 Gene3D - 580 633 - -
Aed4g1893 891 MobiDBLite consensus disorder prediction 218 265 - -
Aed4g1893 891 CDD B3_DNA 334 426 IPR003340 GO:0003677
Aed4g1893 891 ProSiteProfiles Zinc finger CW-type profile. 576 626 IPR011124 GO:0008270
Aed4g1893 891 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 9 823 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1893 Aed-Chr4 22914193 22926576 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1893 11 748 B3 DNA Binding Superfamily AT2G30470 41.039 5.61e-158 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aed4g1893 B3 1.1e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1893 - - gmx:100807252 1641.71