Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1888 ATGAGCGCCCCCCTATCGGCGGAGCTCCGGGCGAAGTACAACGTGCGGTCGATCCCAGTCCGGAAGGAGGACGAGGTGCAGGTGGTGCGTGGAACACACAAGGGTCGCGAGGGAAAGGTGACTCAAGTGTACCGTCGCAAGTGGGTGATCCACATCGAACGCATTACCCGCGAGAAGGTGAACGGCTCCACTGTCAACGTCGGAATCCACCCCTCCAAGGTGGTAGTTACTAAGCTCAAACTCGACAAGGATCGCAAGGCCATTCTCGATCGCAAGGCCAAGGGTCGTGCCGCCGCCGACAAGGAGAAGGGTACCAAGTTCGCTCCCGAAGACATCATGCAAACCGTTGATTAG 354 0.5847 MSAPLSAELRAKYNVRSIPVRKEDEVQVVRGTHKGREGKVTQVYRRKWVIHIERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKAKGRAAADKEKGTKFAPEDIMQTVD 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1888 117 Pfam Ribosomal proteins L26 eukaryotic, L24P archaeal 1 92 IPR005756 GO:0003735|GO:0006412|GO:0015934
Aed4g1888 117 Gene3D - 1 114 IPR014722 -
Aed4g1888 117 SUPERFAMILY Translation proteins SH3-like domain 1 96 IPR008991 -
Aed4g1888 117 SMART kow_9 19 46 IPR005824 -
Aed4g1888 117 MobiDBLite consensus disorder prediction 92 108 - -
Aed4g1888 117 Pfam KOW motif 24 53 IPR005824 -
Aed4g1888 117 TIGRFAM rplX_A_E: ribosomal protein uL24 1 93 IPR005756 GO:0003735|GO:0006412|GO:0015934
Aed4g1888 117 MobiDBLite consensus disorder prediction 92 117 - -
Aed4g1888 117 ProSitePatterns Ribosomal protein L24 signature. 23 40 IPR005825 GO:0003735|GO:0005840|GO:0006412
Aed4g1888 117 PANTHER 60S RIBOSOMAL PROTEIN L26-1 1 117 - -
Aed4g1888 117 CDD KOW_RPL26 24 76 IPR041988 GO:0003723
Aed4g1888 117 PANTHER 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER 1 117 IPR005756 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1888 Aed-Chr4 22876375 22876728 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1888 1 117 Cytoplasmic Ribosomal Protein Gene Family AT3G49910 82.051 1.06e-70 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1888 K02898 - gmx:100775705 213.386