Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1878 ATGGGTTGTGTCCATGGCAAGTGCTGTACCCGTTACCCTTCACCCTCAGTGGGTGGCTCTAGAGACTTCAGAGAACTTGCCCCTTACAGTGCCCAAAGGAAGCACATTCTCACTCAGAGTTCACTGCAATTTGTACCTGTCCCTTCTCATAGCTTCACTTTGGAATACTCTGTGCTCACTCAGAGGGGGTACTATCCTGATTCACCTGATAAAGAAAACCAGGATAGTTTTAGCATTAGGACACAGTTTCAAGGTAACCCCAGTGTCCATTTCTTTGGTGTCTATGATGGGCATGGCGAATTTGGTGGCCAGTGTTCAAATTATGTTAAGGATAGGCTGGTGGAAAATTTGTCAAGTGACATTGCATTGCTGGAGGACCCTGTTAAGGCCTACACTTCTGCATTCTTGACCACAAATGATGACTTGCATAAGAATGAGGTTGATGATTCTTTGAGTGGCACCACTGCAATTACGGTGCTGGTTATTGGGAACACCCTTTATGTTGCTAATGTTGGTGATTCTAGAGCAGTGCTGGCTGTTAAGGATGGGAACCGGGTTGTTGCCGAGGACTTGTCCTCTGATCAGACACCATTTAGGAGAGATGAGTATGAGAGAGTGAAGCTTTCTGGGGCAAGGGTGTTGAGTGTTGATCAGGTGGAAGGGTACAAGGATCCGGATATTCAGACCTGGGGTGATGAAGAGAGTCAGGGTGATGATCCTCCTAGGTTGTGGGTTCAGAATGGGATGGTTCCTGGAGCTGCTTTTACAAGGAGTGTAGGGGATAAGTTGGCTGAGACTATTGGCGTTATTGCTGTTCCGGAGGTGTCAACAGTCCAGCTTACACCTAACCATCTTTTCTTTGTTGTTGCAAGTGATGGTGTATTTGAGTTCCTATCCAGCCAAACCGTTGTTGATATGGCAGCAAGTTATTCAGATCCCCGCGATGCATGTGCTGCCATTGCTGGAGAGTCTTATAAACTATGGTTGGAGCATGAGGGTCGAACAGATGATATAACAATTATCATTGTTCAGATCAAAGGCCTGTCTAATTCAGTTGCATCTGGACTTGGAGCAGGTGAGATCAATGTCAGTACTGTAACGAGGACAAAGAGCAAGAGGATAAAGGGAGGATCTGAAATATCTGCCACTACTGGGTTAGATGTGTATCGTTCAGTCAGGAATGTGATTGGAGACAGGATTTATGGAAGCTTTAGCACGTCCCTTCATACTTTCTCCTAG 1239 0.4592 MGCVHGKCCTRYPSPSVGGSRDFRELAPYSAQRKHILTQSSLQFVPVPSHSFTLEYSVLTQRGYYPDSPDKENQDSFSIRTQFQGNPSVHFFGVYDGHGEFGGQCSNYVKDRLVENLSSDIALLEDPVKAYTSAFLTTNDDLHKNEVDDSLSGTTAITVLVIGNTLYVANVGDSRAVLAVKDGNRVVAEDLSSDQTPFRRDEYERVKLSGARVLSVDQVEGYKDPDIQTWGDEESQGDDPPRLWVQNGMVPGAAFTRSVGDKLAETIGVIAVPEVSTVQLTPNHLFFVVASDGVFEFLSSQTVVDMAASYSDPRDACAAIAGESYKLWLEHEGRTDDITIIIVQIKGLSNSVASGLGAGEINVSTVTRTKSKRIKGGSEISATTGLDVYRSVRNVIGDRIYGSFSTSLHTFS 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1878 412 SUPERFAMILY PP2C-like 45 347 IPR036457 -
Aed4g1878 412 CDD PP2Cc 71 345 IPR001932 -
Aed4g1878 412 Gene3D - 48 347 IPR036457 -
Aed4g1878 412 SMART PP2C_4 39 343 IPR001932 -
Aed4g1878 412 Pfam Protein phosphatase 2C 79 320 IPR001932 -
Aed4g1878 412 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 33 384 - -
Aed4g1878 412 ProSiteProfiles PPM-type phosphatase domain profile. 55 345 IPR001932 -
Aed4g1878 412 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 33 384 - -
Aed4g1878 412 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1878 Aed-Chr4 22803522 22807367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1878 1 350 PP2C-type Phosphatase Gene Family AT3G06270 70.857 1.09e-180 505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1878 - - gmx:100817563 765.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1878 4 22803522 22807367 Aed4g1878 4 22803522 22807367 ECH