Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1868 ATGACCGATGAACGAGAACCACAAGCTTCCCCGAGCAATGGCGTCCACAAGATATCTAAAAAACAAACAGCTGAAAAGGAGAGATCGGCTTTTAGAGGTGGCAGACGTCCACGACCTGGCTTTTCTGATTCATTTTCAAGCATTGACTTGGAAACTTTAGAGATTGAAGAGGGGTCTCCAAGGAGCCAAGGATCTGAAACCCCAAGTTCAAGGGCTAGCACTTCTGATTCGGAGAGTCAGGGATCTTTTGCAGGGACACCTAACAATAACCAGTGGCGTGGTTTCTTCAAACTGCTCAAGAAAGGATCCCAAATGCCTTTCCAAACTTTTCACCCACTTAAAAACGTTCCAAAACTCACTAGAAGAAAAAGCAAGAGAATCAGGGAGGACCTCATCCCTTCTCTCAATTCTCCAGCTCTTCATGCTTCTTTAGACACTGACTTTGCCTGCTTCAAATCTTCCTGGAAAAACTTCTCTCTCGATGAGATCCTCGCTGCAACCGATGACTTTAGCGATGAAAATTTGATTGGGGAGGGAGGCTATGCTGAGGTTTACTTGGGAAAATTGGAGGATGGAAACTTTGTTGCCATTAAACGGTTGACAAGAGGGTGCCAAGAAGAAATGACTGCAGATTTCTTGTCTGAACTTGGCATTATAGTGCACGTGGACCACCCCAATATAGCTAGATTGATTGGATATGGTGTTGAAGGAGGAATGTTTCTTGTTCTTCAATTGTCTCCACATGGCAGCTTGTCATCCATACTTTATGGACCTAGAGAGAAACTGGATTGGAAACTCCGATATAAGATTGCTGTGGGAACTGCTGAGGGCCTTCGCTATCTGCATGAGGCGTGTCAAAGAAGGATCATTCACAAAGACATCAAGGCCTCTAATATTCTTCTCTCAGAGGATTTTGAGCCTCAGATATCTGATTTTGGGCTTGCAAAGTGGTTACCTGACCAATGGACTCACCACACTGTCTCCAAAGTGGAAGGCACATTCGGCTACCTTCCTCCTGAATTCTTCATGCATGGTATAGTAGATGAAAAGACTGATGTCTATGCTTATGGTGTGCTATTATTGGAGCTCATTACTGGTCGTCAAGCTTTGGATAGCTCACAGAAAAGTCTGGTGATGTGGGTGTTAGAGATACTAAGAGGGGAAGAAGAGGGCTTAAGAATCGTGAAGGAACGATCGAATTCAAAACTTCAGAGGACATACTCAGAAGAGCTCTTAGATGCAGAAGAGTACAACTCAACCAAGTTGTTGAGTGAGAGGGATCGGCATATGGAGACTATTCTAGGCTGCAGTAGCTCTGTTACAGATGATGAAGATAAAATAACAGAACAGGGTTGGAGGGGGTTAACAAAGAAGCAGAACCTCAAAGTTAGTTGGGATTTGAAAGGGAAAAGGGGAAGGAAAATGTGTAGGGTTTGGTGTGTGGTGTTGGTATCAGCGTTGATGTTGCAATGGCACGAAGCATTGAGCTCCTACGCTGGTTCCGCAAGTGCGATCATCGACCCTTCCAAGGTCAAACAAGTTTCGAGGAAACCGAGAGCTTTCGTTTACGAGGGTTTCCTCACGGAATTGGAATGCGACCACTTGATTTCCATCTCCAAATCGGAGCTCAAGAGATCCGCGGTGGCCGACAATTTGTCCGGCGAGAGCAAGCTCAGTGAAGTCAGAACCAGCTCCGGCATGTTCATTCCCAAGAACAAGGATCCCATTGTTGCTGGTATTGAGGACAAGATTTCCTCATGGACCTTTCTTCCAAAAGAAAATGGAGAAGACCTACAAGTATTAAGATATGAGCACGGACAGAAATATGATCCTCATTATGATTACTTTGCTGATAAAGTTAATATAGCTCGGGGTGGACACCGAGTTGCCACAGTTCTCCTGTATCTGACTGATGTAACCAAAGGCGGTGAAACAGTGTTCCCTAATGCAGAGGAATTTCCACATTACAGAGGTTCTGAAAAAAATGATCTCTCTGAGTGTGCCCAAAAAGGAATAGCAGTGAAACCGCGGAGAGGGGATGCACTTCTTTTCTTCAGTCTCTACCCAAATGCTATCCCGGACACTAGCAGTCTACATGCAGGATGTCCTGTAATTGAAGGTGAGAAATGGTCAGCAACAAAATGGATTCATGTGGACTCATTTGATGAGATGGTGGGGGATGGAGGGGATTGCAATGATAAGCATGAAAGCTGTGAGAAATGGGCTACCCTTGGAGAATGCACTACTAATCCTGACTATATGGTTGGATCTCCAGGCCTTCCTGGCTATTGCATGAAAAGTTGCAAGGCATGTTAG 2316 0.4491 MTDEREPQASPSNGVHKISKKQTAEKERSAFRGGRRPRPGFSDSFSSIDLETLEIEEGSPRSQGSETPSSRASTSDSESQGSFAGTPNNNQWRGFFKLLKKGSQMPFQTFHPLKNVPKLTRRKSKRIREDLIPSLNSPALHASLDTDFACFKSSWKNFSLDEILAATDDFSDENLIGEGGYAEVYLGKLEDGNFVAIKRLTRGCQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLSSILYGPREKLDWKLRYKIAVGTAEGLRYLHEACQRRIIHKDIKASNILLSEDFEPQISDFGLAKWLPDQWTHHTVSKVEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQKSLVMWVLEILRGEEEGLRIVKERSNSKLQRTYSEELLDAEEYNSTKLLSERDRHMETILGCSSSVTDDEDKITEQGWRGLTKKQNLKVSWDLKGKRGRKMCRVWCVVLVSALMLQWHEALSSYAGSASAIIDPSKVKQVSRKPRAFVYEGFLTELECDHLISISKSELKRSAVADNLSGESKLSEVRTSSGMFIPKNKDPIVAGIEDKISSWTFLPKENGEDLQVLRYEHGQKYDPHYDYFADKVNIARGGHRVATVLLYLTDVTKGGETVFPNAEEFPHYRGSEKNDLSECAQKGIAVKPRRGDALLFFSLYPNAIPDTSSLHAGCPVIEGEKWSATKWIHVDSFDEMVGDGGDCNDKHESCEKWATLGECTTNPDYMVGSPGLPGYCMKSCKAC 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1868 771 ProSitePatterns Serine/Threonine protein kinases active-site signature. 289 301 IPR008271 GO:0004672|GO:0006468
Aed4g1868 771 ProSiteProfiles ShKT domain profile. 731 771 IPR003582 -
Aed4g1868 771 ProSiteProfiles Protein kinase domain profile. 170 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g1868 771 Gene3D Phosphorylase Kinase; domain 1 135 244 - -
Aed4g1868 771 PANTHER PROLYL 4-HYDROXYLASE ALPHA SUBUNIT 475 771 IPR045054 -
Aed4g1868 771 Pfam Protein tyrosine and serine/threonine kinase 174 382 IPR001245 GO:0004672|GO:0006468
Aed4g1868 771 ProSitePatterns Protein kinases ATP-binding region signature. 176 198 IPR017441 GO:0005524
Aed4g1868 771 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 594 718 IPR005123 -
Aed4g1868 771 MobiDBLite consensus disorder prediction 19 34 - -
Aed4g1868 771 SUPERFAMILY Protein kinase-like (PK-like) 155 382 IPR011009 -
Aed4g1868 771 SMART serkin_6 170 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g1868 771 SMART p4hc 518 717 IPR006620 GO:0005506|GO:0016705|GO:0031418
Aed4g1868 771 MobiDBLite consensus disorder prediction 1 18 - -
Aed4g1868 771 Pfam 2OG-Fe(II) oxygenase superfamily 598 717 IPR044862 -
Aed4g1868 771 Gene3D q2cbj1_9rhob like domain 510 718 - -
Aed4g1868 771 MobiDBLite consensus disorder prediction 1 89 - -
Aed4g1868 771 Gene3D Transferase(Phosphotransferase) domain 1 247 446 - -
Aed4g1868 771 MobiDBLite consensus disorder prediction 58 89 - -
Aed4g1868 771 PANTHER PROLYL 4-HYDROXYLASE SUBUNIT ALPHA-LIKE PROTEIN 475 771 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1868 Aed-Chr4 22751409 22759169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1868 142 405 Receptor kinase-like Gene Family AT1G53420 41.176 1.02e-57 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Aed4g1868 PK_Tyr_Ser-Thr 5.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1868 - - gmx:102670300 758.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1868 4 22751409 22759169 Aed4g1868 4 22751409 22759169 ECH
Aed4g1868 4 22751409 22759169 Aed2g2507 2 27757697 27766818 ECH
Aed4g1868 4 22751409 22759169 Aed8g1792 8 22731367 22733694 ECH
Aed4g1868 4 22751409 22759169 Aed8g0776 8 6621416 6625443 ECH