Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1862 ATGGAACCCCAATCTCTCCCTCCTCCTGCCTCCAACATGGACGACGCCGAGGACCCTTCCTCCATTTGGGACTTCTCTTACCTCCTTGACTTCAATCTCGACGACGAAGATATTATTAATAACAACAACTCTCTCCCTCTTCCTCTTCCTCTTCCCTTAAACGACGATGACGATGCTGCTCCCGAGATCCCTGAAAACGACAGGATCCGAAAGCGTGACCCGAGACTCTCATGCTCCAACTTTCTCGCGGGTCGGGTCCCCTGCGCCTGCCCCGAACTGGACGCCAAGCTCGAGGAAGAGGGTTTTCCCGGGAAGAAACGCGCCCGCACCGCGCGTGCATCTGCATCATCATCCGCTCGCTGCCAGGTCCCTGGCTGCGAAGTCGATATCTCCGAGCTCAAAGGCTACCACCGCCGACACAGGGTTTGCCTGCGCTGCGCTAATGCCGCCACCGTCGTGCTCCACGGCGAGCCCAAGAGATACTGCCAACAGTGTGGAAAGTTTCACGTTTTGTCGGATTTCGACGAAGGTAAACGCAGTTGCAGAAGAAAATTAGAGCGTCATAACACCAGAAGGAGAAGAAAGCCTCCAGCGGATTCTGGAGGTGGTGCTGCTCATAGTGAACTACTTCAACCTGTTGCTCAAAATGAGGAACACAGTTATGATGCGGAAGCTGGAAAAGCTCAGAATATTAATAGTGATAGTGTTGTGTCTTTGGCTGTTTCTGGCGAAACCCGAGTGAATAGTGGGAACACTTCTAATTCGCCTTCGTATTGTGACAATAAGAGTGCCTATTCGACTATGGTGGTTGCCCTTTCTTGCCAAACAGGTCGGATTTCTTTCAAGCTTTATGATTGGAATCCTGCGGAATTTCCTAGAAGGCTACGGCACCAAATATTCCAATGGTTGGCAAGCATGCCTGTAGAGTTGGAGGGATATATCCGCCCTGGGTGTACGATCCTGACAATTTTTATTGCAATGCCTAACATTATGTGGATAAATTTACTGAAAGACTCTTTGGAGTATGTGCATGATCTTGTTGCTCCTGGAAAGATGCTATCTGGAAGAGGCACCGCACTAGTTCATCTGAATGACATGATCTTCCGTGTCATGAAAGATGGAACTTCTGTGACGAAAGTCAAGGTAAACATGCAGGCACCGAGGCTTCACTATGTTCATCCCACATACTTTGAGGCTGGCAAATCTATGGAGTTTGTTGCTTGTGGAAGTAACTTGCTGCAGCCTAAGTTTCGGCTTCTTGTATCGTTTTCTGGAAAGTATCTGAAATGTGAGTATTGTGTACCGTTGCCACATAACCGGACTGAAGACAATATTTCTTGTGCTTTTGACAACCAGTTGTACAAGATATATGTCCCACATACAGAGGAAAGTCTCTTTGGGCCTGCATTTATTGAGGTGGAGAATGAATCTGGTTTGTCAAACTTTATTCCTGTACTCATTGGGGATAAAGAAATTTGTACTGAAATGAAGACACTGCAGCAGAAATTAGATGTATCTCTCCTTTCTAAACCATTCCGGTCTGCATCTGGTGCTTCTATATGCAGCTCATGTGAAACTTTTGCACTTAGTCACACATCATCAGACTTACTTGTAGATATAGCATGGTTGCTTAAGGACACCACTTCAGAAAATTTTGACAGAGTGATGACAGCTTCACAAATTCAAAGATATTGTCATTTGTTAGATTTTCTGACATGCAATGATTCAACAATCATTTTGGGAAAAATATTACCAAATTTGATAATCTTGACAGAAAGCATGAAATCCAATATTGTGATTAATAGGACAAGTGATGTTGACATAACGCTTCTCCTGAATCACATACATAATGCTAGAAATGCCATACATCAGAAGCATCAGAAAAGTGGAAGTATAATTGTGAGCTCTGAAATGGAAGGCTTTAAACTTGCTCAGGGAAGCTCCCAAGATAGCAAGCGATCAGTTGTGGTCAACAGTCAGGGTATCCTGTCGAGAGTACTAAAAAGTTCAACTTCCAATGACAGAAAGGAAAGAATACCACTTTTGAAGAGGGACATTATAATGAGTGTGGAAGAGTTGCCTGAAAGATATGGGCGTCGATGTTTGACCGCTCGACCAGCTATTTTTGTGATTGTTTCGGTTGCTGTTTGTCTTGGGGTATGTGTAGCAGTCCTTCATCCTGGTAGGGTTAGTCAGTTAGCAGTATCCGTTAGAAGGTGCTTGTTTAACTATTAG 2235 0.4483 MEPQSLPPPASNMDDAEDPSSIWDFSYLLDFNLDDEDIINNNNSLPLPLPLPLNDDDDAAPEIPENDRIRKRDPRLSCSNFLAGRVPCACPELDAKLEEEGFPGKKRARTARASASSSARCQVPGCEVDISELKGYHRRHRVCLRCANAATVVLHGEPKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNTRRRRKPPADSGGGAAHSELLQPVAQNEEHSYDAEAGKAQNINSDSVVSLAVSGETRVNSGNTSNSPSYCDNKSAYSTMVVALSCQTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPVELEGYIRPGCTILTIFIAMPNIMWINLLKDSLEYVHDLVAPGKMLSGRGTALVHLNDMIFRVMKDGTSVTKVKVNMQAPRLHYVHPTYFEAGKSMEFVACGSNLLQPKFRLLVSFSGKYLKCEYCVPLPHNRTEDNISCAFDNQLYKIYVPHTEESLFGPAFIEVENESGLSNFIPVLIGDKEICTEMKTLQQKLDVSLLSKPFRSASGASICSSCETFALSHTSSDLLVDIAWLLKDTTSENFDRVMTASQIQRYCHLLDFLTCNDSTIILGKILPNLIILTESMKSNIVINRTSDVDITLLLNHIHNARNAIHQKHQKSGSIIVSSEMEGFKLAQGSSQDSKRSVVVNSQGILSRVLKSSTSNDRKERIPLLKRDIIMSVEELPERYGRRCLTARPAIFVIVSVAVCLGVCVAVLHPGRVSQLAVSVRRCLFNY 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1862 744 SUPERFAMILY SBT domain 119 197 IPR036893 GO:0003677|GO:0005634
Aed4g1862 744 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 227 IPR044817 GO:0003677
Aed4g1862 744 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 218 742 IPR044817 GO:0003677
Aed4g1862 744 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 17 227 - -
Aed4g1862 744 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 218 742 - -
Aed4g1862 744 Pfam SBP domain 121 195 IPR004333 GO:0003677
Aed4g1862 744 Gene3D - 116 182 IPR036893 GO:0003677|GO:0005634
Aed4g1862 744 ProSiteProfiles Zinc finger SBP-type profile. 118 195 IPR004333 GO:0003677
Aed4g1862 744 MobiDBLite consensus disorder prediction 185 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1862 Aed-Chr4 22697732 22703989 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1862 7 738 SBP-box Gene Family AT5G18830 45.398 0.0 652
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aed4g1862 SBP 1.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1862 - - gmx:100776034 1226.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1862 4 22697732 22703989 Aed4g1862 4 22697732 22703989 ECH