Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1859 ATGCAAGCACCTCAAGCTTCAGCCACTGATGAAGCTCCTGAGATTTCCCATCAGGCTGTCCCCCTGCGAAACAAAGAAGTTTCAGATGGTGGACCCGGTGGTAGGCGCCCTGATATTTCACTTCAAGTTCCCCCTAGACCTGTAGGGTTTGGCAGCACTAGTGGTGGAAGGGTTCTGGACCATTCTCAAAGTTTTGGTAAAGGGATTTCATCATCAAAAGGCTTCTTGCGGGCCTTGAGCTTCAAAAGGAAAGGAAATGTAGCAGATGGGGAAAGAAGTTCCCTCCTTAATTCAGACTTCAAGACAGCTGCAGACGGTCCTAATATGGCCTCCATATCTGAAATTGCATGGAAAAGATGTACATCTCTTCCTGTTACACCTGCATCAAATCTGTCTCCTTCAGTTTCTACACCCATTTCTGCAAGGACATATAATGAACAGACTAAGCCTCATAAAGATGTTGACCGTTCTAAGGTTTCAAGGTCCCTTTCCGTACCTGGGCGGCGAAATGTTGTTATTGTAAGATCCGTCTCTTTTTCTACTCGTACTGAACAGGAGCAACAAGATTCAAACGATGATCAAATAACTCCTGTGCCAGTAGAAGTTACTGCTGATGAAGAAATTCCTGAAGAGGAAGCAGTGTGCAGGATATGTTTTGATGTGTGTGATGAAAGGAATACCTTTAAAATGGAATGCAGTTGCAAAGGTGACTTGAGATTGGTGCATGAAGAATGTTTAATTAAATGGTTTAGCACAAAAGGAGATAAGAAATGTGATGTATGTAGGCAAGAGGTTCAGAATTTACCTGTAACCTTGCTTCGTGTCACCAGCTCTGTTCAACAACAAAACAGACAGCTGCAAGGTCAGCACAACCTGCATCCGGAGTCAATAAGCGCTTGGCAAGACTTTGTGGTGCTTGTCCTGATCAGCACAATATGCTACTTTTTCTTCCTTGAACAGCTACTGCTTCCTGAATTGAAGACTCAAGCAATTATTATAGCAGCACCATTTGCCTTTACCTTGGGCCTCCTAGCATCTATTTTTGCGGTCATCCTGGCGATTAAAGAGTATATATGGACCTATGCCGCTCTTGAGTTTGCACTTGTGGCTTTAACCGTGCATCTATTTTATACTATGTTGCATTTGACAGCCATATATGCCATTCTACTTTCATCAGTTTTGGGTTTTGGAATTGCTATGGGCATCAACTACGCATATATCCAGTTTGTCACTTGGAGACTTCAGGTCTCTCATGATGATAGCCCAGTATGA 1272 0.4324 MQAPQASATDEAPEISHQAVPLRNKEVSDGGPGGRRPDISLQVPPRPVGFGSTSGGRVLDHSQSFGKGISSSKGFLRALSFKRKGNVADGERSSLLNSDFKTAADGPNMASISEIAWKRCTSLPVTPASNLSPSVSTPISARTYNEQTKPHKDVDRSKVSRSLSVPGRRNVVIVRSVSFSTRTEQEQQDSNDDQITPVPVEVTADEEIPEEEAVCRICFDVCDERNTFKMECSCKGDLRLVHEECLIKWFSTKGDKKCDVCRQEVQNLPVTLLRVTSSVQQQNRQLQGQHNLHPESISAWQDFVVLVLISTICYFFFLEQLLLPELKTQAIIIAAPFAFTLGLLASIFAVILAIKEYIWTYAALEFALVALTVHLFYTMLHLTAIYAILLSSVLGFGIAMGINYAYIQFVTWRLQVSHDDSPV 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1859 423 PANTHER ZINC FINGER PROTEIN 1 423 - -
Aed4g1859 423 Pfam RING-variant domain 215 261 IPR011016 GO:0008270
Aed4g1859 423 ProSiteProfiles Zinc finger RING-CH-type profile. 207 268 IPR011016 GO:0008270
Aed4g1859 423 CDD RING_CH-C4HC3_MARCH 215 262 - -
Aed4g1859 423 MobiDBLite consensus disorder prediction 144 163 - -
Aed4g1859 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 270 IPR013083 -
Aed4g1859 423 MobiDBLite consensus disorder prediction 1 65 - -
Aed4g1859 423 PANTHER OS02G0165000 PROTEIN 1 423 - -
Aed4g1859 423 ProSiteProfiles Zinc finger RING-type profile. 215 262 IPR001841 -
Aed4g1859 423 SUPERFAMILY RING/U-box 211 265 - -
Aed4g1859 423 SMART ringv_2 214 262 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1859 Aed-Chr4 22676087 22681852 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1859 201 322 C3H Transcription Factor Family AT2G37950 28.788 7.12e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1859 - - gmx:100527094 783.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1859 4 22676087 22681852 Aed4g1859 4 22676087 22681852 ECH