Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1840 ATGGCCTCTAGCTGCTTTCTATTGCTATCCTTATTCCTCCTTTTATCATCTCCCACCACCTCCTATGCACTTTCTAATGTCGAAGCCTCTTTCATTGCTCATCGCCAATTGTTACACTTAAGCGAGAATGATGAATTATCTGACAACTATGCAGATAATTATAAGACAAATCTAAGTTTTCCCAACTTAAGACTAAAAAATGCATACATTGCACTTGAGGCATGGAAAAAAGCATTCTACTCGGACCCAACAAATTTCACAGCAAATTGGGTGGGCCCAGATGTTTGCTCTTACAACGGAGTTTTTTGTGAAAAGGCTTTAGATGATCCAAAGATTGACGTTGTAGCTGGGATTGACCTTAACCATGCGGATATCGCAGGTTACATTCCCCCCGAATTCGGTTTGTTAACCGACCTTGCACTTTTGCATATAAACACAAATAGGTTTTGTGGGATTCTCCCAAAAAGTTTTTCAAAGCTTAAGATTCTTTATGAGGTAGACATTAGCAACAATCGATTTGTTGGGAAATTTCCTGAGCCCGTGCTTCCAATCCCAGACATTAAATTCCTTGACTTGAGGTTCAATAACTTTGAAGGGGAATTACCTTCCGAGCTTTTTAACAAAAGCCTCGATGCTATCTTTTTGAACAATAATCGCTTCACATCCACAATTCCTCAGAACCTAGGAACTTCTCCTGCTTCGGTTGTGGTCGTGGCCAATAACAATCTCACAGGTTGCTTGCCTTCGAGCATTAGCAACATGACAAAGACATTGAACGAGTTTGTTGTGATGAACAATAACCTCACTGGTTGCCTTCCCACGGAAGTTGGAAAGCTGGAACAAGTTTCTGTGTTTGACATAAGCCAAAACAATTTTGTTGGCATGTTGCCAAGGACCTTTAATGGGCTTAAGAACGTGGAGCATTTATCCATTGATAACAACAAACTCACAGGTTTTATCCCACGTAATGTTTGTAGCTTGTCAAATTTGGTGAACTTCACATTCTCTTATAATTATTTCAACGGTGAGGAAAAAGGTTGTTTACCTCCTAAGAAAGATGTTGTGTTAGATGATGATAACAATTGCATACCAGATAGACCAAAGCAAAAGGCCTCAAACACTTGCAATGTGGTGATAAGCAAGCCTGTGGATTGTAGCAAAGCACAGTGTGGAGGTGGGAACACCCCGTCTCAATCTTCAAATACACCGACTCCTCAAAAACCATTTAAGCCATCTGAGCCAACACCAACACCAACACCAAAGCAACAAGAACCACCTACATCTACCCCCAGTCCTCCAACACCAAAGCCACAAGAACCCCAACCTACTCCTTCACCCTCACCAAAGCCACAAGAACCCAAACCTACTCCTTCTCCCTCACCAAAGCCACAAGAACCTTCTCTACCTCAAGAACCCAAACCTACTCCTTCTCCCTCACCAAAGCCACAAGAACCTAAACCTATTCCTTCTCCCTCACCAAAGCCACAAGAACCTTCTCCACCTCAAGAACCCAAACCTACTCCTCCTTTAACACCACAACCACCAGAGGAAGATCCTCATAGGGAAGCACCCCGACAACGCCAAAGAGATCCACCACCACCTGTCCACTCCCCACCACTTGTCCACTCCCCCCCGTCGCCATCGGTCCAGTCTCCTCTTCCGCCTGTTCACTCCCTACCACCACCTGTTCATTCCCTACCACCACCGATCCAGTCTCCTCCTTTACTTGTTCACTCCCCACCACCACCTGTTCATTCCCTACCACCACCGGTCCAGTCTCCTCCACCATCTGTTCATTCCCCACCACCACCGGTCCAATCTCCTCCACCACCTGTTCATTCCTCATCACCACCGGTCCAGTCTCCTCCTCCACCTGTGCACTCTCCACCACCGGTTCAGTCTCCTCCTCCACCGGTCCATTCCCCACCACCACCAATTCAGTCTCCTCCTCCACCGGTCCATTCCCCACCACCACCAATTCAATCTCCTCCTCCACCTGTCCATTCCCCACCACCACCGGTCCAGTCTCCTCCTCCACCGGTCCATTCCCCACCACCACCAGTTCAATCTCCTCCTCCACCGGTTCACTCTCCACCACCGCCGGTCCACTCTCCACCACCTGCTTCACCTCCTCCTTTTGAAGACATCATTCTTCCCCCTCACTTTGGCTCTTCTTATGCTTCACCCCCTCCACCTATCATTGCTGGCTACTAA 2214 0.4711 MASSCFLLLSLFLLLSSPTTSYALSNVEASFIAHRQLLHLSENDELSDNYADNYKTNLSFPNLRLKNAYIALEAWKKAFYSDPTNFTANWVGPDVCSYNGVFCEKALDDPKIDVVAGIDLNHADIAGYIPPEFGLLTDLALLHINTNRFCGILPKSFSKLKILYEVDISNNRFVGKFPEPVLPIPDIKFLDLRFNNFEGELPSELFNKSLDAIFLNNNRFTSTIPQNLGTSPASVVVVANNNLTGCLPSSISNMTKTLNEFVVMNNNLTGCLPTEVGKLEQVSVFDISQNNFVGMLPRTFNGLKNVEHLSIDNNKLTGFIPRNVCSLSNLVNFTFSYNYFNGEEKGCLPPKKDVVLDDDNNCIPDRPKQKASNTCNVVISKPVDCSKAQCGGGNTPSQSSNTPTPQKPFKPSEPTPTPTPKQQEPPTSTPSPPTPKPQEPQPTPSPSPKPQEPKPTPSPSPKPQEPSLPQEPKPTPSPSPKPQEPKPIPSPSPKPQEPSPPQEPKPTPPLTPQPPEEDPHREAPRQRQRDPPPPVHSPPLVHSPPSPSVQSPLPPVHSLPPPVHSLPPPIQSPPLLVHSPPPPVHSLPPPVQSPPPSVHSPPPPVQSPPPPVHSSSPPVQSPPPPVHSPPPVQSPPPPVHSPPPPIQSPPPPVHSPPPPIQSPPPPVHSPPPPVQSPPPPVHSPPPPVQSPPPPVHSPPPPVHSPPPASPPPFEDIILPPHFGSSYASPPPPIIAGY 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1840 737 PRINTS Proline rich extensin signature 437 458 - -
Aed4g1840 737 PRINTS Proline rich extensin signature 423 435 - -
Aed4g1840 737 PRINTS Proline rich extensin signature 459 475 - -
Aed4g1840 737 PRINTS Proline rich extensin signature 400 416 - -
Aed4g1840 737 MobiDBLite consensus disorder prediction 390 406 - -
Aed4g1840 737 MobiDBLite consensus disorder prediction 515 529 - -
Aed4g1840 737 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 3 638 - -
Aed4g1840 737 Pfam Leucine rich repeat N-terminal domain 71 103 IPR013210 -
Aed4g1840 737 MobiDBLite consensus disorder prediction 389 737 - -
Aed4g1840 737 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 616 732 - -
Aed4g1840 737 MobiDBLite consensus disorder prediction 530 717 - -
Aed4g1840 737 Gene3D Ribonuclease Inhibitor 67 361 IPR032675 -
Aed4g1840 737 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 616 732 - -
Aed4g1840 737 SUPERFAMILY L domain-like 74 362 - -
Aed4g1840 737 MobiDBLite consensus disorder prediction 407 514 - -
Aed4g1840 737 Pfam Leucine rich repeat 282 338 IPR001611 GO:0005515
Aed4g1840 737 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 3 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1840 Aed-Chr4 22570741 22572954 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1840 4 508 Trihelix Transcription Factor Family AT3G19020 50.725 2.04e-171 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1840 - - gmx:100780677 689.108