Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1839 ATGGCTATTCGTGTTACCTTTTCCTTTTCGGGCTATGTCGCCCAAAACCTCGCTTCCTCCGCCGGCGTGCGCGTTGCCAATTCGCGATGCGTCCAGGAATGCTGGATCCGCACGCGCCTCTTCGGCGCCACCCAGAAATCGGATCTGGATTCTTCCGCCGGCGGAGTCCGCAACTACGCCAGGCCCAAGCCCAAGCCCAAGCCCAGCTGTTGGGCCCAGGCCTCTTACTCCACCCTCGCCGGAGAGTTTCTCGGCGACAGCTGCAAGAGCCCAATGATCTTGGGCCTGATTTCGATCATGAAGTCAACGGCGGGTGTGTCTGGGTCATCCGCGGCGGCTGCGGGTATTTTCGGTATTTCGCCATTTAAAACGAATTCGATTATTCCCTTCTTGCCCGGTTCGAAGTGGCTTCCTTGCAACGAGTCAGTTCCTGACCCCACCTCCATCTCATGGGAGGTCGACAAAGGTGGCACGCGACACGTCGTTTCGGACACGGAATCATCGAATTTTGGGAAGACTAGTTGGCTTTCGCGGTTGCTGAACGTGTGTTCCGAAGACGCCAAAGCTGCGTTCACTGCTGTTACTGTTAGTTTTCTCTTTAAATCGTCCTTGGCTGAACCTAGATCCATTCCCTCCTCTTCTATGTACCCTACTCTTGAAGTAGGTGACCGTGTTCTAACCGAGAAGGTCTCGTTCTTCTTTAGAAAGCCTGATGTTTCGGATATAGTCATTTTTAAAGCGCCTCCTTCTTTGCAGGAGGTTGGTTTTAGTTCGTCTGATGTGTTTATAAAGAGGATTGTGGCTAAGGCTGGGGACACTGTTGAGGTGCGTGATGGGAAACTATTGATAAATGATGCTGCTGAAGAACAGGAATTTGCGTTAGAGCCTCTAGCTTATGAGATGGATCCAATGGTTGTGCCAGAAGGATATGTGTTTGTAATGGGAGACAATCGGAACAACAGCTATGATTCTCATAACTGGGGTCCCCTTCCAGTGGAGAACATTGTTGGTAGGTCCATGTTTCGCTACTGGCCTCCATCCAAAGTATCTGACACTGATACCCTTCGTAAACTCCCACCTGGGAACAAACCTGTGGCAATTTCTTGA 1107 0.5113 MAIRVTFSFSGYVAQNLASSAGVRVANSRCVQECWIRTRLFGATQKSDLDSSAGGVRNYARPKPKPKPSCWAQASYSTLAGEFLGDSCKSPMILGLISIMKSTAGVSGSSAAAAGIFGISPFKTNSIIPFLPGSKWLPCNESVPDPTSISWEVDKGGTRHVVSDTESSNFGKTSWLSRLLNVCSEDAKAAFTAVTVSFLFKSSLAEPRSIPSSSMYPTLEVGDRVLTEKVSFFFRKPDVSDIVIFKAPPSLQEVGFSSSDVFIKRIVAKAGDTVEVRDGKLLINDAAEEQEFALEPLAYEMDPMVVPEGYVFVMGDNRNNSYDSHNWGPLPVENIVGRSMFRYWPPSKVSDTDTLRKLPPGNKPVAIS 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1839 368 Pfam Signal peptidase, peptidase S26 187 344 IPR019533 GO:0004252|GO:0006465
Aed4g1839 368 ProSitePatterns Signal peptidases I serine active site. 212 219 IPR019756 GO:0004252|GO:0016021
Aed4g1839 368 PANTHER THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED 1 352 - -
Aed4g1839 368 ProSitePatterns Signal peptidases I signature 3. 311 324 IPR019758 GO:0004252|GO:0016021
Aed4g1839 368 PRINTS Bacterial leader peptidase 1 (S26A) family signature 262 274 IPR000223 GO:0006508|GO:0008236|GO:0016020
Aed4g1839 368 PRINTS Bacterial leader peptidase 1 (S26A) family signature 203 219 IPR000223 GO:0006508|GO:0008236|GO:0016020
Aed4g1839 368 PRINTS Bacterial leader peptidase 1 (S26A) family signature 306 325 IPR000223 GO:0006508|GO:0008236|GO:0016020
Aed4g1839 368 PANTHER SIGNAL PEPTIDASE I 1 352 IPR000223 GO:0006508|GO:0008236|GO:0016020
Aed4g1839 368 SUPERFAMILY LexA/Signal peptidase 204 349 IPR036286 -
Aed4g1839 368 CDD S26_SPase_I 206 338 IPR019533 GO:0004252|GO:0006465
Aed4g1839 368 MobiDBLite consensus disorder prediction 349 368 - -
Aed4g1839 368 TIGRFAM sigpep_I_bact: signal peptidase I 190 345 IPR000223 GO:0006508|GO:0008236|GO:0016020
Aed4g1839 368 Gene3D Umud Fragment, subunit A 200 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1839 Aed-Chr4 22562802 22567157 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1839 215 345 MADS-box Gene Family AT1G29960 32.576 8.16e-14 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1839 K03100 - gmx:100817525 645.58