Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1828 ATGTCTCAGACTAACTGGGAAGCCGACAAGATGTTAGATGTTTACATCCATGATTATCTTGTCAAGAGGGATTTGAAGGCTTCTGCTCAAGCTTTTCAAGCTGAAGGAAAAGTATCCTCGGACCCTGTTGCTATTGATGCTCCGGGAGGTTTTCTGTTCGAGTGGTGGTCGGTTTTCTGGGATATATTCATTGCACGGACGAATGAGAAGCACTCAGAGGTTGCTGCATCGTATATTGAGCAAAGATTTGGTGAGAACATGGGCCAACTCTTGGACCCAAATCATGCATCAATATTAAAGTCAGCTGCAGCTCCTGGCCAGCCTTCAGGGCAAGTTTTGCATGGTGCTGGTGGTGGGATGTCTCCACAAGTTCAAGCACGTACTCAACAATTACCAGGGTCTACTCTGGATATAAAGGGTGAGATTAGTCCTGTTTTAAATCCCAGAGCTGCGGGTCCTGAAGGATCATTGATGGGAATGCCTGGATCAAATCAAGGTAGCAATAATTTGACTTTAAAAGGGTGGCCTCTCACAGGTTTGGAGCAACTGCGCCCTGGTCTACTCCAGCAACAAAAACCTTTCATGCAGGCTCCTCAGCCTTATCATCAACTCCAAATGTTAACACCACAGCATCAGCAACAGCTTTTGTTGGCACAACAAAATCTGGCGTCACCATCTGCCAGTGAAGAAAGTAGAAGACTGAGAATGCTATTGAATAGTAGGAGTATTGGTCTAAATAAGGATGGTCCTTCAAATCCTGTTGGTGATGTGGTATCAAATGTCGGATCCCCTCTTCAAGGTGGTGGCCCTCCTTTTCCTCGTGGAGATACAGATATGCTAATGAAGTTGAAGCTGGCTCAGATACAGCAGCAGCAACAACAACAGTCAAGTACCAATGCACAGCTTCAACAGCATGCCCTTTCAAACCAGCAATCTCAGACCTCTAATCATAGCATGCATCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGTGCCACTGTGGATGGTAGCATGTCAAACTCATTTAGAGGAAATGACCAGGTTTCAAAAAACCAGATTGGGAGAAAGAGAAAACAGCCTGGATCCTCGTCAGGTCCTGCCAATAGTTCAGGAACAGCAAATACGACAGGTCCATCACCAAGTTCAGCACCCTCAACTCCCTCGACTCATACGCCTGGAGATGTGATATCAATGCCTGCCTTGCCTCATAGTGGTAGTTCTTCAAAGCCTCTAATGATGTTTAGCACAGATGGCACTGGAACCCTTACGTCACCTTCTAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTGGATCGCTTTGTGGAGGATGGATCTCTAGATGATAATGTCGAGTCTTTTTTATCCCATGATGACACAGACCCTAGAGATACTGTTGGCCGTTGTATGGATGTAAGCAAAGGCTTCACATTTTCCGATGTAAATTCTGTACGGGCAAGCACAAGCAAAGTTGCCTGTTGCCATTTCTCATCTGATGGGAAATTACTAGCAAGTGGTGGCCATGACAAAAAGGTTGTTTTATGGTACACAGATTCTCTAAAACAAAAAGCTACTCTAGAAGAGCATTCATCTTTGATTACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTAGTTATTCACTTCGCACCTTCACGGGACATTCTACGTCTGTTATGTCACTAGATTTTCATCCAAATAAAGATGACCTCATCTGCTCTTGTGATGGTGATGGTGAGATAAGATATTGGAGCATAAACAATGGCAGTTGTGCTAGAGTCTCCAAGGGTGGCACCACACAGATGAGATTTCAGCCTCGTCTAGGGAGGTACCTTGCTGCAGCAGCAGAGAATATTGTGTCTATATTTGATGTGGAGACACAAGCATGCCGATATTCATTAAAGGGACACACAAAACCGGTGGTTTGTGTGTGTTGGGACCCTTCTGGGGAGTTGCTGGCATCTGTGAGTGAGGACTCTGTCAGGGTTTGGACACTTGGATCAGGAAGTGAAGGGGAATGTGTTCATGAACTTAGCTGTAATGGCAACAAGTTTCATGCATCTGTTTTCCACCCAACTTACCCTTCATTGTTGTCATTGGAGCTGTGGAACATGAGCGAGAACAAGACAATGACTCTGTCTGCTCATGAAGGTCTTATTACTTCCTTGGCTGTTTCAACTGTAAATGGTTTGGTTGCTTCAGCCAGCCATGACAAGTTCCTCAAGCTCTGGAAGTAA 2298 0.4517 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIEQRFGENMGQLLDPNHASILKSAAAPGQPSGQVLHGAGGGMSPQVQARTQQLPGSTLDIKGEISPVLNPRAAGPEGSLMGMPGSNQGSNNLTLKGWPLTGLEQLRPGLLQQQKPFMQAPQPYHQLQMLTPQHQQQLLLAQQNLASPSASEESRRLRMLLNSRSIGLNKDGPSNPVGDVVSNVGSPLQGGGPPFPRGDTDMLMKLKLAQIQQQQQQQSSTNAQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSATVDGSMSNSFRGNDQVSKNQIGRKRKQPGSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVACCHFSSDGKLLASGGHDKKVVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPSYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSKGGTTQMRFQPRLGRYLAAAAENIVSIFDVETQACRYSLKGHTKPVVCVCWDPSGELLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHASVFHPTYPSLLSLELWNMSENKTMTLSAHEGLITSLAVSTVNGLVASASHDKFLKLWK 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1828 765 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 82 IPR044716 GO:0003714
Aed4g1828 765 ProSiteProfiles Trp-Asp (WD) repeats profile. 733 765 IPR001680 GO:0005515
Aed4g1828 765 MobiDBLite consensus disorder prediction 243 413 - -
Aed4g1828 765 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 82 - -
Aed4g1828 765 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 86 765 - -
Aed4g1828 765 Pfam WD domain, G-beta repeat 489 518 IPR001680 GO:0005515
Aed4g1828 765 Pfam WD domain, G-beta repeat 526 561 IPR001680 GO:0005515
Aed4g1828 765 Pfam WD domain, G-beta repeat 650 684 IPR001680 GO:0005515
Aed4g1828 765 Pfam WD domain, G-beta repeat 569 605 IPR001680 GO:0005515
Aed4g1828 765 Pfam WD domain, G-beta repeat 728 765 IPR001680 GO:0005515
Aed4g1828 765 CDD WD40 487 765 - -
Aed4g1828 765 ProSitePatterns Trp-Asp (WD) repeats signature. 548 562 IPR019775 -
Aed4g1828 765 MobiDBLite consensus disorder prediction 103 124 - -
Aed4g1828 765 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 529 564 - -
Aed4g1828 765 Gene3D - 468 624 IPR015943 GO:0005515
Aed4g1828 765 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 487 518 - -
Aed4g1828 765 ProSiteProfiles Trp-Asp (WD) repeats profile. 487 528 IPR001680 GO:0005515
Aed4g1828 765 MobiDBLite consensus disorder prediction 333 393 - -
Aed4g1828 765 Gene3D - 625 718 IPR015943 GO:0005515
Aed4g1828 765 SMART Lish 8 40 IPR006594 GO:0005515
Aed4g1828 765 Gene3D - 719 765 IPR015943 GO:0005515
Aed4g1828 765 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 733 765 - -
Aed4g1828 765 ProSiteProfiles Trp-Asp (WD) repeats profile. 572 614 IPR001680 GO:0005515
Aed4g1828 765 ProSiteProfiles Trp-Asp (WD) repeats profile. 654 694 IPR001680 GO:0005515
Aed4g1828 765 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 572 610 - -
Aed4g1828 765 ProSiteProfiles Trp-Asp (WD) repeats profile. 529 570 IPR001680 GO:0005515
Aed4g1828 765 SUPERFAMILY WD40 repeat-like 485 765 IPR036322 GO:0005515
Aed4g1828 765 PRINTS G protein beta WD-40 repeat signature 752 765 IPR020472 -
Aed4g1828 765 PRINTS G protein beta WD-40 repeat signature 548 562 IPR020472 -
Aed4g1828 765 PRINTS G protein beta WD-40 repeat signature 506 520 IPR020472 -
Aed4g1828 765 Pfam LisH 10 36 IPR006594 GO:0005515
Aed4g1828 765 MobiDBLite consensus disorder prediction 284 322 - -
Aed4g1828 765 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Aed4g1828 765 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 86 765 IPR044716 GO:0003714
Aed4g1828 765 SMART WD40_4 726 765 IPR001680 GO:0005515
Aed4g1828 765 SMART WD40_4 565 605 IPR001680 GO:0005515
Aed4g1828 765 SMART WD40_4 522 561 IPR001680 GO:0005515
Aed4g1828 765 SMART WD40_4 480 519 IPR001680 GO:0005515
Aed4g1828 765 SMART WD40_4 608 644 IPR001680 GO:0005515
Aed4g1828 765 SMART WD40_4 647 685 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1828 Aed-Chr4 22495080 22504543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1828 524 764 Miscellaneous Gene Families AT5G08390 24.400 4.12e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Aed4g1828 WD40 0.0061 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1828 - - gmx:100816263 1237.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1828 4 22495080 22504543 Aed4g1828 4 22495080 22504543 ECH
Aed6g1116 6 15728066 15738867 Aed4g1828 4 22495080 22504543 PCT