Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1803 ATGGGAGAAACAAAGGACGAAGCATACGAGGAAGATCTTCTCGATTACGAGGAGGAAGACGAAAAGGCACCCGACTCCGTTGGAACTAAAGTCAACGGCGAAGCTACCAAGAAGGGCTATGTTGGAATTCACAGTTCAGGATTCAGAGACTTTCTTCTGAAGCCAGAGCTTCTTCGGGCTATTGTGGACTCGGGATTTGAGCATCCATCTGAAGGCAAACTATCTATATATCTCATATTTTATTTAAAAGTTGTTGTAATACTTGTTTCACAATCTTGTTTTGGAGAACTAAATTACTTTGTGCAACATGAGTGCATACCTCAAGCAATTCTCGGAATGGATGTAATCTGTCAAGCAAAATCTGGAATGGGAAAGACTGCTGTCTTTGTTCTCTCGACTCTGCAGCAGATTGATCCTGTTCCTGGCCAAGTTTCTGCACTTGTTCTTTGTCATACAAGAGAATTAGCATACCAGATATGCCACGAGTTTGAGAGGTTTAGCACCTACTTACCTGATCTCAAAGTTGCTGTCTTTTACGGTGGGGTAAACATCAAAGTTCACAAGGATCTCCTGAAAAATGAGTGCCCTCATATTGTTGTTGGAACACCAGGAAGAATACTAGCACTGACCAGGGATAAGGACCTTTCTTTAAAGAATGTTAGACATTTCATATTGGATGAATGCGACAAGATGCTGGAATCACTGGATATGAGGAAAGACGTTCAAGACATTTTCAAGATGACTCCCCATGACAAACAAGTCATGATGTTCTCAGCAACACTCAGCAAAGAAATTCGACCCGTCTGCAAGAAATTTATGCAAGATCCTATGGAAATTTATGTTGATGATGAGGCCAAGTTGACCCTTCATGGGCTTGTGCAGCACTACATCAAATTGAAAGAGGAGGAGAAAAATCGGAAGTTGAATGATCTTCTCGATGCACTGGACTTTAATCAAGTTGTGATCTTTGTGAAAAGTGTTAGCAGAGCAGCCGAGCTGGACAAACTACTTGTGGAGTGCAACTTTCCATCTATATGCATTCACTCTGGCATGTCCCAGGAAGAAAGGTTAAAACGTTATAAAGGTTTCAAGGAGGGGCATACAAGGATTCTTGTTGCAACAGATTTGGTTGGAAGGGGGATTGATATTGAACGTGTCAACATTGTTATAAATTATGACATGCCTGATTCTGCAGACACATATTTGCACAGGGTCGGTCGAGCTGGAAGATTTGGCACCAAAGGTCTTGCAATCACATTTGTTTCTTGTTCTACTGATGTCGACGTTCTGAACAATGTTCAGTCAAGGTTTGAGGTGGATATAAAACAGCTTCCTGAGCAAATTGATACCTCTACCTATAGTATTGCCATCGTAGATTTTTTTGGGAGCAATGTTAAGTGCTTGGTGACGCAACCGTGCTCATAG 1425 0.4161 MGETKDEAYEEDLLDYEEEDEKAPDSVGTKVNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKLSIYLIFYLKVVVILVSQSCFGELNYFVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQIDTSTYSIAIVDFFGSNVKCLVTQPCS 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1803 474 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 96 451 - -
Aed4g1803 474 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 28 100 - -
Aed4g1803 474 Gene3D - 288 456 IPR027417 -
Aed4g1803 474 SMART ultradead3 93 295 IPR014001 -
Aed4g1803 474 Gene3D - 42 287 IPR027417 -
Aed4g1803 474 Pfam DEAD/DEAH box helicase 101 265 IPR011545 GO:0003676|GO:0005524
Aed4g1803 474 CDD SF2_C_DEAD 292 421 - -
Aed4g1803 474 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 96 451 - -
Aed4g1803 474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 426 IPR027417 -
Aed4g1803 474 CDD DEADc_DDX39 45 281 - -
Aed4g1803 474 Pfam Helicase conserved C-terminal domain 305 412 IPR001650 -
Aed4g1803 474 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 28 100 - -
Aed4g1803 474 MobiDBLite consensus disorder prediction 1 22 - -
Aed4g1803 474 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 106 279 IPR014001 -
Aed4g1803 474 SMART helicmild6 331 412 IPR001650 -
Aed4g1803 474 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 291 452 IPR001650 -
Aed4g1803 474 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1803 Aed-Chr4 22255776 22261172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1803 1 453 Eukaryotic Initiation Factors Gene Family AT5G11200 78.586 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1803 K12812 - gmx:100796232 808.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1803 4 22255776 22261172 Aed4g1803 4 22255776 22261172 ECH