Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1798 ATGGGAACAAAGGGCACAACGCATAAGGGGAAGAGATTTCTGGCCCAAGTCAAGGGCTGTCTGCTGTGCCGGCCTGAGATTGTTGGGACAAGACTCTATGCAACAGTTGATTTAGACAAGGCAAGGGTTGGACGAACTAGAATGATAGGAAACCAACCTTCTCACCCTAGGTGGAATGAGACCTTTGAAATCTACTGTGCTCATCAAATCTCTGACATTATATTCACTGTCAAAGATGGTAACCCAATTGGAGCAACTCTAATAGGAAGAGCGTCTATCCCTGTGGAGCAAGTTCTCAAGGCCCGCATAGAAAAGCGTTGGGTTGAGATATTAGATGAAGAAGATCACCACCCTGTACCGGGTCACGCCAAAATCTGTAAAGCTGATCAAGGTGTCAAAGTTCTATTGCTTATTTGGAATGACAGAAGTTCTGTTCCAGAATTCAAGAAAGATGGCTTGATGGCAACGCATGATCTTGAAACTGCTAATTACTTTAGAGGCACAAAGTTGTTTAGATCCATCGATGGTGGTGCTGCTTTTGGCTTTCCCCAAGCCCCAAATGAAGTTGCTGAATTAGGCCTTGTTAGTGGGAAAGACAATGTTATTGAGAGAAGCATTCAAGATGCCTACATTCATGCTATTAGGCCACACCCTCGAGATTATTTGACGTTTTTTTGCCTTGGCAAAAGGGAGCATAAGGATCCGGGAGAGTATGCTCCTTTAGAGGAACCAGATCTTGAGAGTGACTATAGAAGAGCACAAAATTCAAGGAGGTTCATGATCTATGTTCATTCCAAAATGATGATAGGGGATGATGGTTTCGGGTCAAAAATCTTCGATTTTCCAGAACATTTGAAATGCATCAACCATGTGAATGATCTTGCTAAGGCCAACTGGGACATGTATTCGAATGAAACATTTGTTGAAAATACTAGAAAATTTCACCACCTAATGTGCTACCCCATACAAGTAACCATTGATGGAGCCATAACAAACCTTCCCGGGTTTGAATATTTTCCTGACACCAAGGCTCGGATTTTGGGTTGCAAATCAAAACTCCTTCCTCCAATTCTCACCACTTAG 1083 0.4275 MGTKGTTHKGKRFLAQVKGCLLCRPEIVGTRLYATVDLDKARVGRTRMIGNQPSHPRWNETFEIYCAHQISDIIFTVKDGNPIGATLIGRASIPVEQVLKARIEKRWVEILDEEDHHPVPGHAKICKADQGVKVLLLIWNDRSSVPEFKKDGLMATHDLETANYFRGTKLFRSIDGGAAFGFPQAPNEVAELGLVSGKDNVIERSIQDAYIHAIRPHPRDYLTFFCLGKREHKDPGEYAPLEEPDLESDYRRAQNSRRFMIYVHSKMMIGDDGFGSKIFDFPEHLKCINHVNDLAKANWDMYSNETFVENTRKFHHLMCYPIQVTIDGAITNLPGFEYFPDTKARILGCKSKLLPPILTT 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1798 360 PANTHER PHOSPHOLIPASE D 217 273 IPR015679 -
Aed4g1798 360 PANTHER PHOSPHOLIPASE D 9 126 IPR015679 -
Aed4g1798 360 PANTHER PHOSPHOLIPASE D 127 169 IPR015679 -
Aed4g1798 360 Pfam Phospholipase D C terminal 277 350 IPR024632 -
Aed4g1798 360 PANTHER PHOSPHOLIPASE D ALPHA 3 169 215 - -
Aed4g1798 360 PANTHER PHOSPHOLIPASE D ALPHA 3 276 360 - -
Aed4g1798 360 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 31 112 IPR035892 -
Aed4g1798 360 PANTHER PHOSPHOLIPASE D 169 215 IPR015679 -
Aed4g1798 360 Pfam C2 domain 30 109 IPR000008 -
Aed4g1798 360 PANTHER PHOSPHOLIPASE D ALPHA 3 217 273 - -
Aed4g1798 360 PANTHER PHOSPHOLIPASE D ALPHA 3 9 126 - -
Aed4g1798 360 ProSiteProfiles C2 domain profile. 1 108 IPR000008 -
Aed4g1798 360 PANTHER PHOSPHOLIPASE D ALPHA 3 127 169 - -
Aed4g1798 360 SMART C2_3c 2 107 IPR000008 -
Aed4g1798 360 Gene3D C2 domain 28 119 IPR035892 -
Aed4g1798 360 PANTHER PHOSPHOLIPASE D 276 360 IPR015679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1798 Aed-Chr4 22231085 22234631 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1798 169 360 Phospholipase D Gene Family (Wang group) AT3G15730 38.224 3.22e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1798 K01115 - gmx:100794115 243.432