Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1797 ATGCCGCAATTGCTGCATGGGAGGCTCGACGTGATCATATATGAAGTCGACACACTACCAACTCTTAACGACTGCAATCTCAATCTCTGCTGCAAGCTTGCAGAGACGGGTCTCTATGCAACAGTTGATTTAGACAAGGCAAGGGTTGGAAGGACTAAACTGTTAAATGATCATCATCAATCCTCCAATCCCACGTGGAACGAGACCTTTCACATATACTGTGCCCATTTGATTTCTAATGTTATCTTCACTGTCAAACAAAAAGATCCAATTGATGCAACTCTAATTGGAAGAGCTTATGTCCCAGTTGAGCAAGTTGTGAATGGCAGCATAGTGGATACATGGGTCCAAATATTAGACGAGGATCACAACCCCTTACCAAATGACTCTAAAATCCATGTCAAAATGCAATTCTCTAATGTGAATTGTGTTTTGTGTCCGCGGAATCCGGATGATGGAAGAAGCAAAGTGCAAGGTTTTGAAACTTCAACAATGTTCACCCATCACCAAAAGACTATACTAGAAGGGTCTGTTGCTTGGGATGTTTTGCTCAACTTCCAACAAAGGTGGGAGAAGCAGGTTGAGACTCAACAACTCCTATTCTCTTCAAGCAAGCTTGATGAGTACTTTGTCCCTCGATCCACTGTGTCAACAACAGATGAAAATGAGACATGGAATGTTCAGTTGTTCAGATCCATTGATGGTGGTGCTGCTTTTGGCTTCCCCCAAGACCCAGAAGAAGCGGCTGAATTAGGCCTTGTTAGTGGAAAAGATAGCATCATTGATAGAAGCATTCAAGATGCTTATATCAATGCTATTCGGCGTGCCAAAAACTTCATCTACATTGAAAACCAGTACTTCCTAGGGAGTTCATATGGTTGGCATGCAACAAAAGCCATTCAAAGAAAAGGAATTCAAGCCAATCCAAGGGACTACTTGACCTTCTTCTGCCTTGGAAACCGTGAGGGTAAGAAGGATAGGGAATATACCCCTACTGAGGCACCAGAGCCTGAAACTGATTATGCTAGAGCACAAAAGTCTAGGAGATTCATGATCTATCACCTCGGTGATCATAATGATACAAACATATTTGACAATCCAGAAAGTGTGGACTGCATCAGGCTTGTGAATCATCTTGCTGAAACCAATTGGGAGATATACTCTAAGGAAAGTTTCGATGAGAATAGAGAATTTCACCACCTCATGCGTTATCCCATAGAAGTGACCAACAATGGAGCCATAAGGACCCTTCCAGGGCTAGAACATTTTCCTGACACCAAGGCTAAGATTTTGGGTTCCAAATCAGATTACCTTCCTCCAATTCTCACCACCTAG 1335 0.4262 MPQLLHGRLDVIIYEVDTLPTLNDCNLNLCCKLAETGLYATVDLDKARVGRTKLLNDHHQSSNPTWNETFHIYCAHLISNVIFTVKQKDPIDATLIGRAYVPVEQVVNGSIVDTWVQILDEDHNPLPNDSKIHVKMQFSNVNCVLCPRNPDDGRSKVQGFETSTMFTHHQKTILEGSVAWDVLLNFQQRWEKQVETQQLLFSSSKLDEYFVPRSTVSTTDENETWNVQLFRSIDGGAAFGFPQDPEEAAELGLVSGKDSIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSYGWHATKAIQRKGIQANPRDYLTFFCLGNREGKKDREYTPTEAPEPETDYARAQKSRRFMIYHLGDHNDTNIFDNPESVDCIRLVNHLAETNWEIYSKESFDENREFHHLMRYPIEVTNNGAIRTLPGLEHFPDTKAKILGSKSDYLPPILTT 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1797 444 PANTHER PHOSPHOLIPASE D ALPHA 3 174 296 - -
Aed4g1797 444 PANTHER PHOSPHOLIPASE D ALPHA 3 361 444 - -
Aed4g1797 444 PANTHER PHOSPHOLIPASE D ALPHA 3 3 142 - -
Aed4g1797 444 CDD C2_plant_PLD 1 138 - -
Aed4g1797 444 PANTHER PHOSPHOLIPASE D 297 353 IPR015679 -
Aed4g1797 444 PANTHER PHOSPHOLIPASE D 140 173 IPR015679 -
Aed4g1797 444 PANTHER PHOSPHOLIPASE D 174 296 IPR015679 -
Aed4g1797 444 PANTHER PHOSPHOLIPASE D 361 444 IPR015679 -
Aed4g1797 444 PANTHER PHOSPHOLIPASE D 3 142 IPR015679 -
Aed4g1797 444 Gene3D C2 domain 6 144 IPR035892 -
Aed4g1797 444 SUPERFAMILY Phospholipase D/nuclease 253 295 - -
Aed4g1797 444 SMART C2_3c 8 115 IPR000008 -
Aed4g1797 444 Pfam C2 domain 7 117 IPR000008 -
Aed4g1797 444 PANTHER PHOSPHOLIPASE D ALPHA 3 140 173 - -
Aed4g1797 444 PANTHER PHOSPHOLIPASE D ALPHA 3 297 353 - -
Aed4g1797 444 Pfam Phospholipase D C terminal 362 434 IPR024632 -
Aed4g1797 444 ProSiteProfiles C2 domain profile. 1 116 IPR000008 -
Aed4g1797 444 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 141 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1797 Aed-Chr4 22225396 22229706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1797 354 444 Phospholipase D Gene Family (Wang group) AT1G52570 52.747 1.70e-21 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1797 K01115 - gmx:100791688 235.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1797 4 22225396 22229706 Aed4g1797 4 22225396 22229706 ECH