Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1787 ATGGAACTTGGGTTAGGTCTTGCTCTCCCCACTCACAATTTTGCTGAGGAATTCAAGCTTAACAAGAAGTCGAAACAGAATAATAAGCGCAGCTTCGAAGAGACCTTTGAACATTTTTTTAAACCTTTGCCTTTACTAGTTTGGAGTGGACAGCCAAACGAAGAAGATGACCGAAGTGAAAAGGAAAAGCATTTGGTGGGGTGGCCACCGGTTAAATCATGGAGGAGGAAAGAACTCCATCAACAGCAGCAGCATCCAGCAGCTGCAAGAGTCCAAATTATTAGGAACGATAATAGGATTCAAGCTAATGAGAATCATCAAAGTAGAGGACCAAACTCTTCATACGTCAAGGTTAACATGGAAGGGGTAGCCATAGGAAGGAAAATCAATTTGAGGCTTTTCAATTCTTTTCAGACACTTACAACCACCTTGATCACCATGTTTGCTAAATACCAAAAATTTGAGGAAATTGGAGAAAGTTACACACTCACCTTTCAAAACGAACAAGGGGATTGGCTGCAAGTAGGACATGTTCCATGGCAATCCTTTATTGGTACTGTGCGGCGTTTGGTGATGCTGAGGAATGGAAGTGAAACTATTTGA 603 0.4163 MELGLGLALPTHNFAEEFKLNKKSKQNNKRSFEETFEHFFKPLPLLVWSGQPNEEDDRSEKEKHLVGWPPVKSWRRKELHQQQQHPAAARVQIIRNDNRIQANENHQSRGPNSSYVKVNMEGVAIGRKINLRLFNSFQTLTTTLITMFAKYQKFEEIGESYTLTFQNEQGDWLQVGHVPWQSFIGTVRRLVMLRNGSETI 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1787 200 PANTHER AUXIN-RESPONSIVE PROTEIN IAA29 1 196 - -
Aed4g1787 200 Coils Coil 15 35 - -
Aed4g1787 200 ProSiteProfiles PB1 domain profile. 113 200 IPR000270 GO:0005515
Aed4g1787 200 SUPERFAMILY CAD & PB1 domains 105 190 - -
Aed4g1787 200 Pfam AUX/IAA family 22 198 IPR033389 -
Aed4g1787 200 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 196 IPR003311 GO:0005634|GO:0006355
Aed4g1787 200 Gene3D - 114 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1787 Aed-Chr4 22152059 22153348 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1787 70 192 B3 DNA Binding Superfamily AT2G46530 26.950 3.35e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Aed4g1787 AUX_IAA 6.3e-22 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1787 K14484 - gmx:100802759 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1787 4 22152059 22153348 Aed4g1787 4 22152059 22153348 ECH