Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1774 ATGGGGAAGCCCACAGGGAAGAAGAAGGGTAGCGTTACTCCAGGTGCTGCAAATACACACGCGAAGCCAGGGAAAGCTTCAAAAGCTTTCGATGAAGACACGGCGATGTTCATCACGATGTCACAAGAGTTCAGGGAAGAAGGCAACAAGTTGTTTCAGAAGAAGGATCACGAAGGCGCCATGCTCAAGTACGAGAAGGCACTGAATCTGCTCCCGAAGAACCACATAGATGTGGCGCACCTTCGCACCTACATGGCCACGTGTTACATTCAATTGGGTCTCGGGGAGTACCCTCGAGCCATTCACCAGTGTAATTTGGCGTTGGAAGTGTCCCCAAGATACAGCAAAGCTCTTCTGAAAAGAGCCACCTGCTATCGTGCGCTTAATCGCTTCGATTTGGCTTTCAGGGATGTTCAACTTGTTCTGGGCATGGAACCCAATAACCTCACCGCGTTGGAGCTTCTCGAGAGTCTCGGAAAATCAACGGAAGAAAAGGGGGTCTCTGTTGATGATGATAAAGGGGTGGTTTTTGATGCTACCGTTCGTGACTCTCCTGCTCCTCCTCCGCAAAAACTGAAGAAAAAGAGAGCTAAGAAAATTGAGGACAAAAAGGTGGATGTGGAGGAAAAAGTGAGTGGTGTTGAGGACAAGGTGGTTGTGGAGGAAAAAGTGAGTGGTGTCGAGGATAAACAAGTGGTTTCAAAAACGATTGAGCAAGTGAAAAGGGTGGTGGAACCTATGGAGGAAGAAAAAGCTGTCACGATTACAAGGAGTGTGAAGTTGGTATTTAGAGAGGATATAAGGTGGGCAGAGTTACCCGTTAATTGTAGTGTGAAGTTGGTGAGGGATATAGCTAGGGATCGGTTTCCAGGTTTGAAGGGTGTTCTTGTCAAGTATAAGGATAAAGAGGGTGATTTGGTTACAATCACTACTACGGATGAACTAAGGTTGGCTGAAAAATCTGCTCCTGAAAAGGCATCGTTTAGGCTTTATATTACTGAGGTCAGTCCAGATCAAGAACCTTCTTATGATGGAAATGGAACAACCTATGGGGATGAAGTGCGAAGGGGCAGTGTTGAGAATGGGGATATGGAGAAAGACAGAGATAAAGATATGGCAAAAAGGATGATTACTGTGGAGGATTGGCTTCTCCAGTTTGCAAGGCTGTTCAAGAACCATGTAGGGTTTGAATCTGATTCTTATCTAGATACTCATGAGTATGCAATGAAGCTGTATGAAGAAGCAATGGAGAATACGGTGGCAAGCAATGATGCTCAAGAACTTTTTGGAATTGCTGCAAATAAATTTCAAGAGATGGCAGCTTTGGCATTGTTTAATTGGGGGAGTGTTCAAATGTCCAGGGCAAGGAACCAAGGTTTCTTTTCAGAGGACGGGGCAAGAGAATCTTCCTTGGAGCATATAAAAGCTGCATATGAGTTGGCGCAAAAGGAGTACGAGAAAGCAGAAATGAGATATGAAGAAGCCTTGAAAATCAAGCCTGACTTCTATGAAGGGTATCTTGCTCTTGGGCATCAGCAGTTTGAGCAAGCAAGGCTGTGTTGGTGTTATGCAATGGCATGCAAGAAGGACTTAGAAGCTGGCTTTTCTGATGAGGTTCTAAAACTTTATAATAAGGCAGAGGACAGCATGGAGAAAGGCATCTTGATGTGGGAGGAGATTGAGGAGCAGCGTTTGAATGGAATATCCAAATCAGATAAATATAAAGAACAGTTAGAGAAAATGGGTTTGGATAGTCTTCTCCAAGATACTTCTGATGATGAAGCTTCAAAGCAAGCTGCAAAGATGAGGTCTCAGATACATCTTTTATGGGGAACATTGTTGTATGAACGTTCTGTTGTGGAATATAAGCTTGGCCTTCCCACGTGGGAGGAATGTTTGGAGGTTGCAGTTGAAAAGTTTGAACTAGCTGGGACTTCTGCAACGGATATTGCTTTCATTGTGAAGAATCACTGCTCAAATGAAACAGCACTTGAAGGGTTCAAAATTGATGAGATAGTACAGGCATGGAATGAGATGTATGATGCTCAAGGGTGGCAGTTTGGTGATCCATCATTTCGACTTGAACCCTTGTTTCGTCGGCGTGTTCCTAAACTTCATTACGTCTTGGAGCAATTTTAA 2139 0.4418 MGKPTGKKKGSVTPGAANTHAKPGKASKAFDEDTAMFITMSQEFREEGNKLFQKKDHEGAMLKYEKALNLLPKNHIDVAHLRTYMATCYIQLGLGEYPRAIHQCNLALEVSPRYSKALLKRATCYRALNRFDLAFRDVQLVLGMEPNNLTALELLESLGKSTEEKGVSVDDDKGVVFDATVRDSPAPPPQKLKKKRAKKIEDKKVDVEEKVSGVEDKVVVEEKVSGVEDKQVVSKTIEQVKRVVEPMEEEKAVTITRSVKLVFREDIRWAELPVNCSVKLVRDIARDRFPGLKGVLVKYKDKEGDLVTITTTDELRLAEKSAPEKASFRLYITEVSPDQEPSYDGNGTTYGDEVRRGSVENGDMEKDRDKDMAKRMITVEDWLLQFARLFKNHVGFESDSYLDTHEYAMKLYEEAMENTVASNDAQELFGIAANKFQEMAALALFNWGSVQMSRARNQGFFSEDGARESSLEHIKAAYELAQKEYEKAEMRYEEALKIKPDFYEGYLALGHQQFEQARLCWCYAMACKKDLEAGFSDEVLKLYNKAEDSMEKGILMWEEIEEQRLNGISKSDKYKEQLEKMGLDSLLQDTSDDEASKQAAKMRSQIHLLWGTLLYERSVVEYKLGLPTWEECLEVAVEKFELAGTSATDIAFIVKNHCSNETALEGFKIDEIVQAWNEMYDAQGWQFGDPSFRLEPLFRRRVPKLHYVLEQF 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1774 712 Pfam PB1 domain 256 333 IPR000270 GO:0005515
Aed4g1774 712 Gene3D - 239 335 - -
Aed4g1774 712 PANTHER PROTEIN PHOX4 1 711 - -
Aed4g1774 712 SUPERFAMILY TPR-like 42 506 IPR011990 GO:0005515
Aed4g1774 712 ProSiteProfiles TPR repeat profile. 41 74 IPR019734 GO:0005515
Aed4g1774 712 Coils Coil 471 498 - -
Aed4g1774 712 SUPERFAMILY CAD & PB1 domains 255 344 - -
Aed4g1774 712 SUPERFAMILY TPR-like 438 551 IPR011990 GO:0005515
Aed4g1774 712 Gene3D Tetratricopeptide repeat domain 38 166 IPR011990 GO:0005515
Aed4g1774 712 ProSiteProfiles PB1 domain profile. 256 335 IPR000270 GO:0005515
Aed4g1774 712 MobiDBLite consensus disorder prediction 1 28 - -
Aed4g1774 712 PANTHER PROTEIN CLMP1 1 711 IPR044517 -
Aed4g1774 712 SMART tpr_5 469 502 IPR019734 GO:0005515
Aed4g1774 712 SMART tpr_5 115 148 IPR019734 GO:0005515
Aed4g1774 712 SMART tpr_5 41 74 IPR019734 GO:0005515
Aed4g1774 712 SMART tpr_5 79 114 IPR019734 GO:0005515
Aed4g1774 712 MobiDBLite consensus disorder prediction 338 368 - -
Aed4g1774 712 CDD PB1 259 332 - -
Aed4g1774 712 Gene3D Tetratricopeptide repeat domain 365 565 IPR011990 GO:0005515
Aed4g1774 712 SMART PB1_new 256 335 IPR000270 GO:0005515
Aed4g1774 712 Coils Coil 197 217 - -
Aed4g1774 712 ProSiteProfiles TPR repeat profile. 115 148 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1774 Aed-Chr4 22037117 22041018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1774 25 148 Calmodulin-binding Proteins AT3G25230 28.571 3.35e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1774 - - gmx:100805760 1230.31