Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1764 ATGGCGTACCATAACCCTCAAGAACTTCCACTTCACCATTTCACCGACCAACACCAACACCACCACCAACAACAACAACATAACCAGCCTCTGCCTGACACCTCCTTGCCCTCCGACCCTGCCTCCAAACCTGGCTCCGATCCTCACCAACCCGCGCCAAATTGGCTCAACAACGCCCTTCTCCGAACGCACTACACCGACAACAGTAACACCACCACCACCACCACTAACAACACCAACGGCACCAACTTCCTGAACCTCCACACTTCCGCTTCCGACTCCGGCCAATGGCTCGCCCGCCCGGTCCTGAACCGCAACCACAGCGAGGTCATTGACGACGTGGCCGACGAATCCGGCGATTTGAAGGGCGGAGGCGGCGACGGCATGATGAACTGGCAAAATGCGAGGTTGAAGGGGGAGATTCTAGCGCACCCTCTCTACGAACAGCTTCTGTCGGCACACGTGGCCTGCTTGCGGATCGCCACGCCGGTCGACCAGTTACCCAGGATCGACGCTCAGCTCGCACAGTCCCAGAATGTCGTCGCCAAGTACTCTTCCTTCGGACAAGCCATCGTTGGGGACGATAAGGAACTCGATCACTTCTTGTCACACTATGTTCTGTTGCTCTGTTCTTTCAAAGAACAACTCCAACAGCATGTCCGGGTCCATGCCATGGAAGCAGTCATGGCTTGTTGGGAGATCGAGCAATCCTTACAAAGCTTAACAGGAGTTTCACCCGGGGAAGGTACGGGAGCAACAATGTCTGATGACGAAGATGACCAAGTAGACAGTGATGCCAATCTGTTTGATGGTGGTGGTTTGGACGGTCCTGATAACATGGGATCATTCGGTCCACTTATTCCCACAGAGAACGAGAGGTCCCTCATGGAACGTGTAAGGCATGAATTAAAACACGAATTGAAACAGGGTTATAAAGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCAGGTGACACGACCTCTGTCCTGAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACAGAGGAGGATAAGGCACGGTTGGTGCAGGAAACCGGTTTGCAGTTAAAGCAAATCAATAATTGGTTTATCAATCAAAGGAAGAGGAACTGGCATAGCAATCCCTCAACTTCTACTGTCTTGAAGAGCAAGCGCAAAAGGGGATAA 1203 0.5195 MAYHNPQELPLHHFTDQHQHHHQQQQHNQPLPDTSLPSDPASKPGSDPHQPAPNWLNNALLRTHYTDNSNTTTTTTNNTNGTNFLNLHTSASDSGQWLARPVLNRNHSEVIDDVADESGDLKGGGGDGMMNWQNARLKGEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSSFGQAIVGDDKELDHFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGGGLDGPDNMGSFGPLIPTENERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKRG 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1764 400 Pfam Homeobox KN domain 342 381 IPR008422 GO:0003677|GO:0006355
Aed4g1764 400 CDD homeodomain 325 386 IPR001356 GO:0003677
Aed4g1764 400 Pfam ELK domain 302 323 IPR005539 GO:0003677
Aed4g1764 400 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 41 399 - -
Aed4g1764 400 SMART ELK_2 302 323 IPR005539 GO:0003677
Aed4g1764 400 Gene3D - 323 384 - -
Aed4g1764 400 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 41 399 - -
Aed4g1764 400 MobiDBLite consensus disorder prediction 16 55 - -
Aed4g1764 400 Pfam KNOX1 domain 137 178 IPR005540 GO:0003677|GO:0005634
Aed4g1764 400 SMART KNOX1_2 135 179 IPR005540 GO:0003677|GO:0005634
Aed4g1764 400 SMART KNOX2_2 188 243 IPR005541 GO:0003677|GO:0005634
Aed4g1764 400 ProSiteProfiles 'Homeobox' domain profile. 322 385 IPR001356 GO:0003677
Aed4g1764 400 MobiDBLite consensus disorder prediction 24 41 - -
Aed4g1764 400 ProSiteProfiles ELK domain profile. 302 322 IPR005539 GO:0003677
Aed4g1764 400 SUPERFAMILY Homeodomain-like 324 387 IPR009057 -
Aed4g1764 400 Pfam KNOX2 domain 192 242 IPR005541 GO:0003677|GO:0005634
Aed4g1764 400 SMART HOX_1 324 389 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1764 Aed-Chr4 21988300 21993460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1764 1 399 Homeobox Transcription Factor Family AT5G25220 65.256 0.0 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Aed4g1764 KNOX2 2.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1764 - - gmx:100790048 663.299