Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1761 ATGGATCAAGATAGAGGTGAGGTACTGGATCCGGTTCATGATGGGAATTTGAGTCATTTGGTTGAAGAAGGGGTTGCAATTGAAAGAGCTAGTATAAGTGGAGAAGCTGGAACTTCAGGTGAGGTGGGTAAGGATTTGGGATCTGATACGGGACTAAAGAAAGTGATAAAGGGTGAGGGCAAGCATGATCAAGACAATATCAGTGATAAATTACCTTCTAATTCAAACCATTTGGTTAATCAGGAAGTGATTGAAACAGTGGTTGTAATTGAGTCTGTTCAAACTGAGTACGTCAATGAAGATAATAGGAAATTGGAAGCAAAAGTTGATGAATCAGGGTTGAGCTTGGTATCCATGATGAAAGCACCAAAAGGGGTGTCTGAAACTGATCAAAATTCATGTGTGATTGATATAAAGTGCAGCAGCCGCAAAAATAATTATGAGAGTTCTGAAGGTGAAAGGATTTGTAGGATTTGCCATCTGACTTCTGGGCAGTCATCGGATGCAACAACTGTTGGCACTGCTAATAGTGCTACAAGTGCAGATTTGATTCAGCTTGGTTGTGCGTGTAAAGATGAGCTAGGCATTGCACACGTTCATTGTGCTGAGGCATGGTTCAAGCTTAAGGGGAACAGGTTATGTGAAATATGTGGTGAGGCTGCAAAAAATGTTTCAGGTGTTACAAGTAATGGATTTATGGAAGAGTGGAATGAAAGAAGATTCATGGACAACCATGGTAACTCGCCCCAAAGGGTTGTTGGATGCTGGCGAGGACAGCCATTTTGTAACTTCTTGATGGCATGCCTGGTAATAGCGTTTGTTCTGCCGTGGTTTTTTCGTGTAAATATGTTCTAG 855 0.4152 MDQDRGEVLDPVHDGNLSHLVEEGVAIERASISGEAGTSGEVGKDLGSDTGLKKVIKGEGKHDQDNISDKLPSNSNHLVNQEVIETVVVIESVQTEYVNEDNRKLEAKVDESGLSLVSMMKAPKGVSETDQNSCVIDIKCSSRKNNYESSEGERICRICHLTSGQSSDATTVGTANSATSADLIQLGCACKDELGIAHVHCAEAWFKLKGNRLCEICGEAAKNVSGVTSNGFMEEWNERRFMDNHGNSPQRVVGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1761 284 Pfam RING-variant domain 156 217 IPR011016 GO:0008270
Aed4g1761 284 MobiDBLite consensus disorder prediction 31 51 - -
Aed4g1761 284 ProSiteProfiles Zinc finger RING-CH-type profile. 148 224 IPR011016 GO:0008270
Aed4g1761 284 SMART ringv_2 155 218 IPR011016 GO:0008270
Aed4g1761 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 229 IPR013083 -
Aed4g1761 284 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 70 284 - -
Aed4g1761 284 SUPERFAMILY RING/U-box 151 219 - -
Aed4g1761 284 PANTHER ZINC FINGER, RING-CH-TYPE 70 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1761 Aed-Chr4 21954716 21959172 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1761 136 283 C3H Transcription Factor Family AT5G05830 41.176 2.81e-30 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1761 - - gmx:100776373 458.373