Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1754 GCGATAACGATTCTGTTACGCTTTCGCCATTTGATTTGTGATTTTTTTTCGCAGCCGTCACACAAGACATTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGGCAGAACAGGCCCATCCCCTACTGGATCCGCATGAGGACCGACAACACCATCAGGTACAACGCGAAACGCCGCCACTGGCGCCGCACCAAGCTTGGATTCTGA 207 0.5072 AITILLRFRHLICDFFSQPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1754 68 ProSitePatterns Ribosomal protein L39e signature. 47 63 IPR020083 GO:0003735|GO:0005840|GO:0006412
Aed4g1754 68 Pfam Ribosomal L39 protein 26 66 IPR000077 GO:0003735|GO:0005840|GO:0006412
Aed4g1754 68 SUPERFAMILY Ribosomal protein L39e 20 67 IPR023626 -
Aed4g1754 68 Gene3D Ribosomal protein L39e 19 68 IPR023626 -
Aed4g1754 68 PANTHER RIBOSOMAL PROTEIN L39E 10 68 - -
Aed4g1754 68 PANTHER - 10 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1754 Aed-Chr4 21921037 21921616 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1754 19 68 Cytoplasmic Ribosomal Protein Gene Family AT4G31985 90.000 9.80e-29 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1754 K02924 - gmx:100306305 110.923