Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1750 ATGGAAACACTGAGCCATGAGGCTAAAAGGACTCCTTCTAGTCCAAGCACCCCATCTGTTGAGGAAGAAGAAGAACAACAACAAAAGGCAAAAGCAGATACTTTATTATTGGATCTAAATGCCTCTTGTGATGATTCTGTTGTTGGGTGCAATAGTCCAGTGCTGAATCTGATCACGTGTTTGGACACAGATGAAAAACATGATAATGGGTCAGAGCCAAGAGTTTTCTCTTGCAACTACTGTCAGAGAAAGTTCTACAGTTCACAAGCTCTTGGGGGACACCAAAACGCCCACAAGAGAGAGAGGTCAATTGCAAAGAGAGGTCAGAGAAAGTTCTATAGTTCACAAACTCTTGGGATTCCCTTTCTCCACTATGCCACTGTGGCTTCTCTGCCTCTCCATGGTGCTAGTAGTAATAACAAACCACTTGGAATTCAACCTCACTCCATCATTCACAAGCCTTCTTCTTCTTCTTCTCATTTTTCATTCAATAATGGGTTTGGAACCACTTTTGGACATCATCATGGGTGGTCTAGACCCCTTATTGGTCAACAACCTGGAATAGGGAAACTAACGATGGAGAGTTGTCACAAAACATCATCACGAGCTCATGTTGGGAAATTCGATGTGGTGAAAAAGACCATGCTTAATGGAAATCTAGTTAGTGGAATTACTCGTTTGAAGACCATTAATCAAGAGGAAATGAAGCACCTTGACTTGTCCCTAAAGCTCTAA 735 0.4204 METLSHEAKRTPSSPSTPSVEEEEEQQQKAKADTLLLDLNASCDDSVVGCNSPVLNLITCLDTDEKHDNGSEPRVFSCNYCQRKFYSSQALGGHQNAHKRERSIAKRGQRKFYSSQTLGIPFLHYATVASLPLHGASSNNKPLGIQPHSIIHKPSSSSSHFSFNNGFGTTFGHHHGWSRPLIGQQPGIGKLTMESCHKTSSRAHVGKFDVVKKTMLNGNLVSGITRLKTINQEEMKHLDLSLKL 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1750 244 MobiDBLite consensus disorder prediction 1 30 - -
Aed4g1750 244 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 19 244 - -
Aed4g1750 244 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 103 IPR013087 -
Aed4g1750 244 SUPERFAMILY beta-beta-alpha zinc fingers 73 103 IPR036236 -
Aed4g1750 244 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Aed4g1750 244 Gene3D Classic Zinc Finger 59 119 - -
Aed4g1750 244 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 19 244 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1750 Aed-Chr4 21870684 21871418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1750 17 244 C2H2 Transcription Factor Family AT5G10970 42.510 1.47e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed4g1750 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1750 - - gmx:100819663 275.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1198 6 16726914 16727834 Aed4g1750 4 21870684 21871418 PCT