Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1744 ATGGCAAAGTGTCATCAGAACAACGTCGGATCCATCGCTCTCGACCACCGTCACTCCGCCAAAAATGCCACCGCTGGAGGCCACTTCCGCGTGCTCCGCCGCTTGATCTTCGACGCCGTCAGCTGCGGTGGCACCTCTCGGTACCGGTATCGCCAGCGCGAAGCCTCCGCCGACAACGACGATGACGGCATTAGCTCGGCGGCGAGTCATAAAGAGAAGGAGGAGAGGTCGGAGAAGCTATCGGATCTGTTGAACGCAGCGGAGAACAAAACGACGGCGGCGGTGGAGGAAGAGAAGAAGAAGAAGGAAGAGGCATTGGCGGAGCTGAAGCAAGCGGTGAAGGAGCTGCGTGAAGAAGAAGACCTCACGAAGCGACGAATCGCTGCGGCGAGAGTGAGGTCGCTCGCGAAGGAAGATTCCGAAGCGAGAGCGAATCTCGCAATGCTCGGAGCAATTCCTCCTCTCGTCGGAATGCTGGATTCGGAAGACGCTTATTCTCAAATCGCTTCGCTCTACGCTTTACTCAATCTCGGAATCGGCAACGATGCAAACAAAGCGGCTATAGTGAAAGTTGGCGCGGTGCACAAGATGCTGAAGCTTATCGAATCGAGCGGTTCAGATTCGTCGGTGTCCGAAGCGATTGTTGCGAATTTCCTCGGATTAAGCGCTTTGGATTCGAACAAACCGATAATAGGATCCTCCGGTGCAATACCGTTCCTAGTTAGAACCCTAAAGAATTCAGACGAGTCGAAATCACAAGTAAAGCAAGATGCTCTGCGCGCTTTGTACAATCTTTCGATCTGTCAGAGCAACGTTTCGGTGGTATTGGAAACCGATTTGGTGTGGTTCTTAGTGAGCACGGTAGGGGAGATGGAAGTGAGTGAGAGGAGTCTCGCGATTCTTAGCAATCTGGTGTCGACTCCGGAGGGTAGAAAAGCGATTAGCAGCGTGAGCGAGGCGATTCCGATTCTGGTAGACGCGCTGAGTTGGACTGACTCGCCGGAGTGTCAAGAGAAGGCGTCGTACGTATTGATGATATTGGCGCACAAAGCGTACGGTGACAGGCGGGTGATGATAGAGGCGGGGATAGTGTCGTCGCTGCTTGAGCTGACGCTTGTGGGAACCACGCTGGCTCAGAAGAGAGCCTCCAGAATATTGGAGTGTTTGAGAGTAGACAAAGGGAAGCAAGTTTCTGGCCATGGAAGCTACTTGGGAATGGGATTGGGAGGAGTCTCTGCCCCTATTTGTGGATCTGGATCAGGATCTTCTTCGTCCAAGGTGGTGGAGGAAGATGGAATGATGATGAGTGAGGAAAAGAAAGCGGTGAAGCAGTTAGTGCAGCAGAGTTTGCAGAGCAATATGATGAAAATTGTCAAGAGAGCAAACTTGCGTCAGGATTTTGTTCCATCTACCCATTTTGCTTCACTCACTACTTCCACTTCCAAGAGCCTCCCATTTTGA 1461 0.5229 MAKCHQNNVGSIALDHRHSAKNATAGGHFRVLRRLIFDAVSCGGTSRYRYRQREASADNDDDGISSAASHKEKEERSEKLSDLLNAAENKTTAAVEEEKKKKEEALAELKQAVKELREEEDLTKRRIAAARVRSLAKEDSEARANLAMLGAIPPLVGMLDSEDAYSQIASLYALLNLGIGNDANKAAIVKVGAVHKMLKLIESSGSDSSVSEAIVANFLGLSALDSNKPIIGSSGAIPFLVRTLKNSDESKSQVKQDALRALYNLSICQSNVSVVLETDLVWFLVSTVGEMEVSERSLAILSNLVSTPEGRKAISSVSEAIPILVDALSWTDSPECQEKASYVLMILAHKAYGDRRVMIEAGIVSSLLELTLVGTTLAQKRASRILECLRVDKGKQVSGHGSYLGMGLGGVSAPICGSGSGSSSSKVVEEDGMMMSEEKKAVKQLVQQSLQSNMMKIVKRANLRQDFVPSTHFASLTTSTSKSLPF 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1744 486 Pfam Armadillo/beta-catenin-like repeat 227 266 IPR000225 GO:0005515
Aed4g1744 486 MobiDBLite consensus disorder prediction 53 78 - -
Aed4g1744 486 Gene3D - 74 250 IPR011989 -
Aed4g1744 486 Coils Coil 70 133 - -
Aed4g1744 486 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 486 - -
Aed4g1744 486 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 235 280 IPR000225 GO:0005515
Aed4g1744 486 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 486 - -
Aed4g1744 486 Gene3D - 251 400 IPR011989 -
Aed4g1744 486 SUPERFAMILY ARM repeat 108 390 IPR016024 -
Aed4g1744 486 SMART arm_5 139 179 IPR000225 GO:0005515
Aed4g1744 486 SMART arm_5 181 223 IPR000225 GO:0005515
Aed4g1744 486 SMART arm_5 268 306 IPR000225 GO:0005515
Aed4g1744 486 SMART arm_5 307 349 IPR000225 GO:0005515
Aed4g1744 486 SMART arm_5 224 267 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1744 Aed-Chr4 21797304 21800083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1744 116 396 U-box Gene Family AT1G67530 32.986 1.48e-33 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1744 - - gmx:100796229 731.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g1207 6 16820505 16824356 Aed4g1744 4 21797304 21800083 PCT