Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1708 ATGGTCTGCGAGATGGAGAACGATTGTATAGAGGACATGGACATTGAGGCCCTTTCTTCAATGTGGCCTGAAGATATTGGAACCGATGTTGGGAAGCAGTTTAACATAGAAAAGCCTGGAAAGGACCAAGACATGTTAGAGGAGGTAATTACAATCATAGAGGACCCAACCATAGTTGATTTCAAGCGTCTCATGGAGCTTACAAATTTTACAGAAAAGGGCTCTTCTCAGTTGGCCTACCTAATGAAGCAATGGGAGTACAAGCAGGCCAATGTCGCGTGTCTTCTCAGGGAAGAACTCGACAACCTGAGCAAGCAAAGACAGGATGTTGAGCTCAGGAAGTTGAAGATATTGGAAGAGCATCGATTTGAGGAAGAACGATATGGAGGTGATAAACGTCCAGTTTCTATATTGGATGATGTTTATGATGATGGTATACGGAAAGATGTTCCATGCAGGAAAAGTGATTTTGTGGTTCAAAACAAGAGGAGTGAGATTGATGCTGAGTATGATACCGTCATATACTGGAAACAACGTGCCTTGCATTTAGAGAAGCAACTGGAGGCAAGTATCCACAGAGAACAGATACTTGAGGAAAAGTTGCAAGAAAGAATAGCAAATATTGAAAGACAGTCCTCACCTGTGGAAGAACTCTCCCAGATACTTAAGAGGGCAGATAATTTCTTGCATTTTATACTCCAAAATGCACCTGTTGTTATTGGCCATCAGGACAAGGAGTTGCGCTATTGCTTTATCTATAATCATTTTCCAAGTTTACAAGAGGAGGACATCATAGGAAAAACTGATGTTGAAATATTCACGGGATCTGGTGTTACGGAAGCTCAGGAGTTTAAGAGAGAAGTTTTGGAAAAAGGATTACCTGCAAAAAGGGAAATTACTTTTGAGACAGAACTATTTGGTATGGCTGAAATTCTTTCCAACACAAAACTTGATTGGGAGCAAAGACAACTATTGGATGTCATGCTATCTTCTGGAGATTTGGTTCTTCAACTTATAAATGACATACTTGATCTTTCCAAGGTCGAGTCAGGTGTGATGAAATTGGAAGCTACTAAGTTCCGGCCAAGAGAGGTAGTCAAGCATGTACTGCAGACTGCTGCAGCTTCATTGCAAAAAATATTAACCTTAGAAGGACATGTAGCAGATGATGTACCTATTGAGGTCATTGGTGATGTTTTAAGGATGCGGCAAATTCTCACAAATTTAATTAGCAATGCCATAAAGTTCACCCATGAAGGCAAAGTTGGAATAAACCTTTACGTTGTGCCAGAGCCTACTTTTGCAAAAGCAGAAGACATCCATATGATGACTCCAAACCATTCAACTATTTCAGTAAATGGTGTGAAAGAACATGATGGTTGTCAAAAACATGATGACCATCTCAGCCAAAACCATGCATTCAACGACGAGTGTAGATCCCCGGTTAAAAGCGAATGCTCAATGAATGGAGACACCGAAGAGCTGACTCATTCAGCTGAAACAACAGTGTGGATACGCTGTGATGTATATGACACAGGCATAGGAATACCAGAAGATGCTATACCAACCTTGTTTAAAAGGTACATGCAAGTCAGTGCAGACCACTCTCGAAAGTATGGAGGGACAGGCCTAGGACTAGCAATTTGCAAACAACTGGTTGAGTTGATGGGGGGTCAATTAACAGTGTCTAGCAAAGAACACTATGGTTCTACTTTCACTTTCATACTCCCATACAAGGTTTCAATTGCTTGTGATAATTCTGATGATCCAGATGAGCTTTCTGATGTGGAGAATAATGATGCTGCGTCCGATGATACAATAGAGAGTTTCTTCCAATTCCAACCATGCACATTGGGTTCTCTTTTCTCTTCTAATGGATCTAGCAGGACACAGGTGTTATTACCACACAAAATTGGCTACACAGGCTCACATAAACTTGGTGGATTTTCTGAGGGTTTATATTCATTCCCCTCCAATGATATCATGATGTCAAAAGGGACATGTTCAGTTGATGATGCATCTTCTTCGGTGGTTGATGCTCCGGAGATGTCTGAATCGGCTAGTTCATCTGATCAAAGCCAAGAAACAAAGAAAAAAAGTTTAGTTGGCAGAGATGAAAAGCATCAACATAAGAAGGCTCATGCTTGGTCCTTGAATGGTTATGCAGATTCCTCAGAAGCTACTGTAGCAACAAAGTCAAGTGAAACACAACAAACATGTCATGGTGTTTCAACTACACAATGTGTTACAAGCAGCAGCAGCACATCAGAAGTAACCAAATCCACAATAAAGCCTAGGATCCTTCTTGTTGAAGATAACAAGATCAATGTCATGGTGACACAGTCCATGATGAAGCAATTAGGCCATAGCATAGATGTTGTGAATAATGGAGTGGAAGCAGTACGTGCAGTTCAGCACCACACTTATGACCTGATTCTGATGGATGTTTGCATGCCAGTTATGAATGGTCTTCAAGCAACAAAACTGATTCGAACTTTTGAGGAAACAGGCGATTGGGATGCTGCAAGAATTGCTGGTATCGAGCAAAGTCTGCCAGATTCAGATTATGAATGTTCTGTACCATCTACAAAGCGAATCCCCATTGTTGCGGTGAGTACTTAG 2622 0.4108 MVCEMENDCIEDMDIEALSSMWPEDIGTDVGKQFNIEKPGKDQDMLEEVITIIEDPTIVDFKRLMELTNFTEKGSSQLAYLMKQWEYKQANVACLLREELDNLSKQRQDVELRKLKILEEHRFEEERYGGDKRPVSILDDVYDDGIRKDVPCRKSDFVVQNKRSEIDAEYDTVIYWKQRALHLEKQLEASIHREQILEEKLQERIANIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYCFIYNHFPSLQEEDIIGKTDVEIFTGSGVTEAQEFKREVLEKGLPAKREITFETELFGMAEILSNTKLDWEQRQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKILTLEGHVADDVPIEVIGDVLRMRQILTNLISNAIKFTHEGKVGINLYVVPEPTFAKAEDIHMMTPNHSTISVNGVKEHDGCQKHDDHLSQNHAFNDECRSPVKSECSMNGDTEELTHSAETTVWIRCDVYDTGIGIPEDAIPTLFKRYMQVSADHSRKYGGTGLGLAICKQLVELMGGQLTVSSKEHYGSTFTFILPYKVSIACDNSDDPDELSDVENNDAASDDTIESFFQFQPCTLGSLFSSNGSSRTQVLLPHKIGYTGSHKLGGFSEGLYSFPSNDIMMSKGTCSVDDASSSVVDAPEMSESASSSDQSQETKKKSLVGRDEKHQHKKAHAWSLNGYADSSEATVATKSSETQQTCHGVSTTQCVTSSSSTSEVTKSTIKPRILLVEDNKINVMVTQSMMKQLGHSIDVVNNGVEAVRAVQHHTYDLILMDVCMPVMNGLQATKLIRTFEETGDWDAARIAGIEQSLPDSDYECSVPSTKRIPIVAVST 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1708 873 PRINTS Bacterial sensor protein C-terminal signature 564 577 IPR004358 GO:0016310|GO:0016772
Aed4g1708 873 PRINTS Bacterial sensor protein C-terminal signature 540 558 IPR004358 GO:0016310|GO:0016772
Aed4g1708 873 PRINTS Bacterial sensor protein C-terminal signature 505 519 IPR004358 GO:0016310|GO:0016772
Aed4g1708 873 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 5 307 - -
Aed4g1708 873 MobiDBLite consensus disorder prediction 672 713 - -
Aed4g1708 873 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 305 351 IPR036097 GO:0000155|GO:0007165
Aed4g1708 873 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 5 307 - -
Aed4g1708 873 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 308 872 - -
Aed4g1708 873 SUPERFAMILY CheY-like 765 834 IPR011006 -
Aed4g1708 873 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 340 578 IPR036890 -
Aed4g1708 873 Coils Coil 191 211 - -
Aed4g1708 873 SMART HKATPase_4 397 580 IPR003594 -
Aed4g1708 873 ProSiteProfiles Histidine kinase domain profile. 303 580 IPR005467 -
Aed4g1708 873 Coils Coil 100 120 - -
Aed4g1708 873 CDD HisKA 307 347 IPR003661 GO:0000155|GO:0007165
Aed4g1708 873 Pfam His Kinase A (phospho-acceptor) domain 307 351 IPR003661 GO:0000155|GO:0007165
Aed4g1708 873 SMART REC_2 765 860 IPR001789 GO:0000160
Aed4g1708 873 MobiDBLite consensus disorder prediction 672 696 - -
Aed4g1708 873 CDD REC_hyHK_CKI1_RcsC-like 767 872 - -
Aed4g1708 873 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 397 578 IPR003594 -
Aed4g1708 873 Gene3D - 350 583 IPR036890 -
Aed4g1708 873 ProSiteProfiles Response regulatory domain profile. 766 873 IPR001789 GO:0000160
Aed4g1708 873 Gene3D - 303 349 - -
Aed4g1708 873 MobiDBLite consensus disorder prediction 697 713 - -
Aed4g1708 873 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 308 872 - -
Aed4g1708 873 CDD HATPase_EvgS-ArcB-TorS-like 402 577 - -
Aed4g1708 873 Pfam Response regulator receiver domain 767 834 IPR001789 GO:0000160
Aed4g1708 873 Gene3D - 758 873 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1708 Aed-Chr4 21533025 21537362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1708 305 872 Histidine Kinase Gene Family AT5G10720 51.404 2.18e-179 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aed4g1708 HATPase_c 2.6e-28 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1708 - - gmx:100811117 1082.78