Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1700 ATGGCGGACGTCATGGTGATGAAGGAGATCGAAGACACGGCGCTGCGTCTCAACATCGATCTCTCCACTCTCGATCTCGACGCCATTCGCCTCCCTCCCGGCGAAGATTGCGGCATCGTCAGCGATGACGAAGAGGTTTACCAGGAAGACAATCTGGAGTATGAGTCTGGATTTGGCAACATCATTGTCGTCGATAACCTCCCCATCGTTCCGAAAGAGAAGTTCGAGAAGCTCGAAGGAGTGGTTCGGAAGATTTATAGTCAGATTGGTGTTATCAAGGATGATGGCCTCTGGATGCCCATTGATCCTGAATCTGAGAAAACCCTAGGTTACTGCTTTATTGAGTACAATACCCCTCAGGAAGCGGAGCTTGCTAAAGAGAAGACTCATGGGTACAAATTGGACCGTGCACACATTTTTGCTGTCAGCATGTTTGATGACTTTGACAAATTTATGAAAGTTCCGAATGAGTGGGCTCCTCCTGAAACTAAGCCATATGCTCCAGGGGAAAATCTTCAACACTGGCTCACTGATGCAAAGGCCAGGGACCAGTTTGTGATTCGTGCTGGTTCTGATACTGAGGTTTTGTGGAACGACGCAAGGCATTTAAAGCCTGATCCTGTTTATAAGCGTGCATTTTGGACTGAGAGTTTTGTGCAATGGTCTCCTTTGGGCACATACTTGGCCACTGTTCACAGACAGGGGGCAGCAGTCTGGGGAGGTGCTACAAGCTTTAATAGACTTATGCGTTATGCGCATCCTCAGGTAAAACTTATTGATTTTTCACCTGGTGAGAAGTATTTGGTAACATATAGCAGCCATGAACCAAGCAATCCCCGAGATGCCAATGTAAGAGTTGTGATGAATATATTTGACGTGAGGACTGGTAAAGTTATGAGGGACTTTAAAGGAAGTGCTGATGATTTTGCAGTGGGAGGTGCTGGAGGTGTCACTGGAGTTTCATGGCCTGTTTTCAAATGGAGTGGTGGAAGAGATGATAAATACTTTGCAAGGATGGGAAAAAATGTACTATCCATTTATGAGACAGAGACCTTTTCTCTCGTTGAGAAGAAATCCTTAAAGGTTGAAAATATAATGGATTTCAACTGGTCTCCAACTGATCCAATTATTGCTCTCTTTGTTCCTGAGATGGGAGGTGGTAACCAGCCTGCCAGGGTTAGTCTTATTCAAATCCCTAGCAAAGAGGAACTCAGGCAGAAGAACCTGTTCAGTGTCAGTGATTGTAAATTGTACTGGCAAAGCAATGGAGACTACCTTGCTGTTAATGTAGAGAGGTATACAAAAACAAAAAAAAGCACATACACAGGCTTTGAACTATTCCGTATAAAAGAACGGGATATACCAATTGAAGTTTTGGAGCTTGAGAATAAGAATGATAAGATCATTGCCTTTGCTTGGGAGCCAAAGGGCCACAGGTTTGCAGTTATTCATGGTGATAACCCTAAGCCTGATGTTAGCATATACTCCATGCGTACTGGTCAGAACAGCCGAATTTCAAAACTCACTACTCTGAAAGGCAAGCAAGCAAATGCTCTGTTTTGGTCACCTGCTGGCCGCTACATTGTACTAGCTGGGTTGAAAGGCTTCAATGGGCAGTTGGAATTCTACAACGTTGATGAACTTGAAACCATGGCTACTGCTGAACATTTTATGGCAACAGATATTGAATGGGATCCAACCGGAAGGTATGTGGCAACTGCTGTTACTTCAGTTCATGAAATGGAGAATGGTTTCAATATATGGTCTTTCAATGGCAAGCATCTATATCGGATTCTGAAGGATCACTTCTTTCAGTTCTTATGGCGACCAAGGCCACCATCTTTCTTGACTCCTGAGAAGGAGGAAGAGATTGCTAAGAACTTGAAGAAGTACAGCAAGAAATATGAGGCCGAAGATCAAGATGTCTCGTTGCTGCTGAGTGAGCAGGAGCGTGAGAAGCGTAGGTTGTTGAAGGAAGAGTGGGAGAAGTGGGTTAACGAATGGAAGCGGACCCACGAAGAAGAGAGTTTACAGAGGCAAAAGCTTAGGGATGGAGAGGCCAGCGATGAAGAGGAGGAGTACGAGGCGAAGGACATTGAAGTGGAGGAAGTGATCGATGTGAAAGAAGAGGTTCTTCACCTTGAGTATGGTCAAGAGTGA 2160 0.4481 MADVMVMKEIEDTALRLNIDLSTLDLDAIRLPPGEDCGIVSDDEEVYQEDNLEYESGFGNIIVVDNLPIVPKEKFEKLEGVVRKIYSQIGVIKDDGLWMPIDPESEKTLGYCFIEYNTPQEAELAKEKTHGYKLDRAHIFAVSMFDDFDKFMKVPNEWAPPETKPYAPGENLQHWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRAFWTESFVQWSPLGTYLATVHRQGAAVWGGATSFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANVRVVMNIFDVRTGKVMRDFKGSADDFAVGGAGGVTGVSWPVFKWSGGRDDKYFARMGKNVLSIYETETFSLVEKKSLKVENIMDFNWSPTDPIIALFVPEMGGGNQPARVSLIQIPSKEELRQKNLFSVSDCKLYWQSNGDYLAVNVERYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPKPDVSIYSMRTGQNSRISKLTTLKGKQANALFWSPAGRYIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKHLYRILKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRRLLKEEWEKWVNEWKRTHEEESLQRQKLRDGEASDEEEEYEAKDIEVEEVIDVKEEVLHLEYGQE 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1700 719 SUPERFAMILY DPP6 N-terminal domain-like 218 599 - -
Aed4g1700 719 MobiDBLite consensus disorder prediction 671 687 - -
Aed4g1700 719 Gene3D - 182 383 IPR015943 GO:0005515
Aed4g1700 719 Gene3D - 417 616 IPR015943 GO:0005515
Aed4g1700 719 PIRSF Transl_init_eIF3b 7 714 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Aed4g1700 719 SUPERFAMILY RNA-binding domain, RBD 50 140 IPR035979 GO:0003676
Aed4g1700 719 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Aed4g1700 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Aed4g1700 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 136 IPR000504 GO:0003723
Aed4g1700 719 CDD RRM_eIF3B 59 142 IPR034363 -
Aed4g1700 719 Gene3D - 55 154 IPR012677 -
Aed4g1700 719 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 5 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Aed4g1700 719 Pfam Eukaryotic translation initiation factor eIF2A 407 606 IPR013979 -
Aed4g1700 719 SMART rrm1_1 61 142 IPR000504 GO:0003723
Aed4g1700 719 MobiDBLite consensus disorder prediction 671 695 - -
Aed4g1700 719 PANTHER BNACNNG51870D PROTEIN 5 712 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1700 5 713 Eukaryotic Initiation Factors Gene Family AT5G27640 75.809 0.0 1162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1700 K03253 - gmx:100779711 1370.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1700 4 21460120 21464617 Aed4g1700 4 21460120 21464617 ECH