Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1698 ATGAATGTCAACATTGATTCAACAGACCATAGCCAGAGCCAAAGTAGAAAACGAAAGCTACTCGATGCTGATGATTCTCCATCGCTGAATTTCAACATTGATTCATCAGACGATAACCAGGACCTAAGTAAAAAACAAAAGCAATCGGATACCAATGATTCTCCGTCTCTGGAATCGCCGTGTTCCAACATGAGTCCCAGAAGGTATCAGATAGAGGTGTTTGAAGTTGCAAGGAGAAGGAACACAATAGCTGTGTTGGATACAGGGTCTGGTAAGACCTTGATTGCTGTAATGCTTATGAAAGAGGTTGGTCAAGCCATCAAGACTAGTGGTGTAAAGAAGCTGATTCTTTTCTTGGCTCCCACAGTTCATCTTGTCAATCAGCAATTCAAGAATATAAAATATCTGACTGATTTTCAAGTTGAGGAATACTTTGGGGCCAAAGGAGTTGATACATGGACTTTGAAGACGTGGGAGAGGGAGATTAGTAACAATGATGTTCTGGTTATGACACCCCAGATTCTTTTGGATGCCTTAAGAAAAGCATTCCTGCGTATGGAAATGATATGCTTGATTGTTATTGATGAATGTCATAGAGCAACTGGCAACCATCCCTACACAAAAATAATGAAGGAGTTTTATCACCAAGCTAATGAAAAGCCAAAGATTTTAGGGATGACAGCATCACCAGTTGGTAAAAAAGGTGTTTCCTCTACTATGGATTGTGAGGATCAGATATCAGAACTTGAAAGCATCTTGGATTCTCAGAGATATACTGTTGAAGATCGGAAAGAGATGGATAGATGTATCCCATCTGCTAAAGAGAGTTGTAGATATTATGACCAAGCACGATTTTCTGCTTTGAGTTTGAAACCAAAGATTGAAACCTTGTGGTTCAAGTTTGGTGCACTGTTATCAGAACATCAAAGTAACTATAAGGATGTGGATGATAAATTTAAGACACTGTCTCAGCGGATGTCTAATGAACTTGCAAAAATTTTACATTGCCTTGAAGATCTTGGGATCCTATGTGCTTATGAGGCTGTTAAAATCTGTCATGAAAATTTCTCCAAATCAGAAGGAGTGTGTGAAATTTACAGAAAATGTTATCTTCAGTGTATAACTTTTCTTGAAGAAGTAATCAAGTTAATCAAAGAATCTCTCCATCTTGCTGATAAAAAGATTTTGGAGGTTGATTTTGATTATTCACTGGCAGAAGATTTAGGATACATATCTCCAAAATTAGTTGAACTTATTAAACTCTTTCAGTCATTTGGAGAATCTAGTCAGGTGTTGTGCCTTATTTTTGTTGATAGAATCATTACAGCCAAGGTGATTGAAAGATTTGCAAAGACAGTTCCCCATATTTCTCATTTAACAGTTTCATATTTAACTGGAAACAATACATCGGTTGATGCCCTGGCTCCAAAGAGGCAGAAAGAGATATTGGATTCTTTCCGCTCTGGAAAGGTCAATCTATTATTTACTACTGATGTACTTGAGGAAGGAATTCATGTGCCAAACTGCTCATGTGTGATACGTTTTGACCTCCCGAAGACAGTTTGTAGTTATGTCCAATCTCGTGGAAGATCTAGGCAGGCAAACTCCCAATTTGTTGTGATGTTGGAGAGGGGAAACTTGAAGCAAAGAGATCAACTCTTTGACATCATTAGGAGTGAGCGCTCCATGACTGATGCATCTATTTATAAAGACCATAAATCTAGTTTAAGGGCATGTACGGTGGGGAAAACAAATGCATACTATGTGGAATCTACTGGAGCATCTGTCACTTTAGATTCTAGTGTTAGTCTCATCCACCGATACTGTGGAACACTCCCACGAGATAAGTACTCCTGTGTAAAGCCTGATTTTGAGTTTCTGCCTGTGGAAGGGGGTTATCAATGTAAATTAATATTACCATCTAATTCAGCTTTCCAAACAATAATTGGTCCTTCTGGAAAAGATATTCGTTTGGCAAAGCATCTTGCATGTTTTGAAGCTTGTAAGAAGCTGCACCAAATGGGTGCCCTAAATGAACATTTGGTTCCATTAATTGAAGATTCTTCAGAAGATGACCATATTGTGAAAAATAAAGAATCAAGTTCTGGTGCAGGGACCACCAAAAGAAAGGAGTTACATGGAACAGCTAACATTCGTGCATTACGTGGTGTATGGAGAGACAAACTTGATGGGGCCAAATTCCATGCCTATAAGTTTGAATTCACATGCAATATTGTTAGTGAAATATACTCTGGGTTTGCTCTTTTAATTGAATCAAAGCTTGAGGATGATGTGGGGAATACAGAATTAGATCTTTATGTAGTCTCAAAGATCGTGAAAGCGTCTATCACTTCATGTGGGCAAGTTGATTTGGATGCTGAAAAGATGATGAAAGCCAAATGCTTCCATGAGCTTTTTTTCAATGGTTTGTTTGGGAGATTGATCTTTAAGTCCAAATCACCAGGAGGAAAAAGAGAATTTTTACTTCAGAAAGACACCAAATCATTGTGGAGCCCAAAATACTCGTATATGCTTCTTCCACTAGAGAAATTGAATGATATTTGTAAGGGATCTTTGCAAATTAATTGGTGCGGAATCAATTCTTGTCCTTCTGCCATTGAATTTGTAAAGAGGAATTTTTCTTTGGTTACTAGAGATTGTGATGATAACGACACAATCACATCACCTCATGATACCAGTTCATCAGAGATGGAATGTGTAGGAACAAACAAGATTCGCTTTGCTAATTGTGTGGTTGATGCTGATGATATAAAAGATAGGGTAGTTTTGGCCATTCACACTGGGAAAATATATTGTATTATTGAGATCGACAGTAACCTATCTGCTGAAAGTCCTTTCTATGGAAACAATGAAAAATCTAAGGAATGCATTACCTTCTCGGATTATTTCAGCAAAAGCTATGGGATTACACTGAGACATCCTGGACAGCCTTTGTTACGATTGAAGCAAAGTCATAATCCACACAATCTTCTTTTCAACTTCCATGAGGAGGATGCACGAGACAAGTCATCACGAATTAGCCCTGCAGCCTCAAAAATGCCAGCGCATGTTCATATTCCACCCGAGCTTCTATACATTCTTGATGTTAAAAGAGATGTGTTGAAATCACTGTACTTGTTGCCATCTCTGATGCACCGCATTGAATCTTTGATGTTATCTAGTCAGCTTAGAGATGAGATAGATGGTGAAACTAGCAAGTTCAACATACGTAGCTCACTGATTCTAGAAGCACTTACAACTTTGAGATGTAGTGAAAGTTTTTCAATGGAACGTCTTGAGTTGCTAGGAGATTCTGTTTTGAAGTATGTGGTGAGCTGTCACCTCTTTCTTAAATATCCTAAGAAACACGAAGGACAATTATCTTCCAGACGATCATCGGCTGTTTGTAATTCAACCCTACATAAACTGGGGACAGATCGCAAATTACAGGGATATATTCGAGACTCTGCATTTGAACCACGCCGTTGGGTTGCTCCAGGACAGCGTTCTATACACCCTGTTTGTTGTGATTGTGGGTTGGAAACCCTTGAAGTGCCTTTAGATGTGAAATTCCATACTGAAGATCCAAAAGTTGTGGTTGGGAAGTTTTGCGACAAGGGTCACCGCTGGATGTGTTCTAAGACTATTGCTGACTGTGTTGAAGCTCTGATAGGAGCATACTATGTAGATGGTGGACTCTTTGCTTCACTTAATGTGATGAAATGGCTCGGCATTGGTGCTGAACTTGAACTATCACTGGTTGAGGAAGCAATCACTGCTGCATCTCTGCATACATGTGTGCCAAAAGAAAGTGAAATTGCATGTCTTGAAAAGAAAATTGGGTATGAATTTTCAGTCAAGGGACTCTTAGTGGAGGCAATCACACATTTGTCTGAGAAAGAACTTGGGATTGGCTGTTGTTATGAGAGGCTTGAATTTCTTGGTGACTCGGTATTGGACCTGCTTATCACACAGCATCTTTATAAGAGTCACACGGATATTGATCCAGGGGTGTTGACTGACTTACGTTCTGCTTCTGTCAATAATGACAATTTTGCTCAAGTAGCTGTTAGACATAACTTTCACCAGCACCTTCTACATAGCTCAGGATTATTACTGAGCCAGATATCAGAATATGTGAAGGTCATTTCTGAATCAGATCCCAGATCACTTCCAAGCATTAGAGCTCCCAAGGCACTTGGAGATGTAGTGGAAAGTATTGTTGGGGCTATACTAATTGATACCAAGCTCAGTCTTGACCAAGTGTGGGCTGTTTTCTATCCTCTATTATCTCCCATTGTTACTCCTGATAAACTTGAATTGCCCCCACTTCGTGAATTAAATGAATTATGTGATTCACTTGGGTATTTTGTAAAAGTAAAAGAAAACTGTGAAAAAATGGGACCGGCAATGCATGTTGAAGTTAGTGTACAGCTTCCAAATGCCCTATTGGTTCGTGAAGGAAAGGGGGCAACTAAAAAAACTGCAAAAGGAGAAGCTGCTTTTCATTTGTTGAAGGATCTTGAGAAGCGGGGAATTTCACATGGTAGTTTCATGTCCAAGGGAAAACGGGATAATCCTCACCATATCTATGATTCATCTCATCTCAAAATGGATTCTAGCATTTGTTCTTCTCTAATTGAAGGACATTCCTCAGAGCCAGCATCACATAAAACACACACATTGGATGAAACTAACTTAACTGCAATTAGTTTATCAATTAATATGAAGAAGGGAGGACCGCGGACCACACTATATGAAGTATGTAAGAAACTTCAGTGGCCAGTGCCTGCATTTGATTCAACAGAATATAAAGATAGATCTCTATTTGAATCCTGTGAAGAGCTGCAACGAAGCAAGGGACAAAACTGTTTTGTGTCGAAAATTATCTTGTGCATACCCAATTATGGTAATATAGAATGCAAAGGAGAAGCTAGAAGTGATAAGAAGGCCTCCTTTGACTCTGCTGCAGTTCAAATGCTTATTGAGCTGCAAAGACTGGGAAAAGTTGAAATTGATGCTCCTCCCCCTTCTAGTTAA 5040 0.3907 MNVNIDSTDHSQSQSRKRKLLDADDSPSLNFNIDSSDDNQDLSKKQKQSDTNDSPSLESPCSNMSPRRYQIEVFEVARRRNTIAVLDTGSGKTLIAVMLMKEVGQAIKTSGVKKLILFLAPTVHLVNQQFKNIKYLTDFQVEEYFGAKGVDTWTLKTWEREISNNDVLVMTPQILLDALRKAFLRMEMICLIVIDECHRATGNHPYTKIMKEFYHQANEKPKILGMTASPVGKKGVSSTMDCEDQISELESILDSQRYTVEDRKEMDRCIPSAKESCRYYDQARFSALSLKPKIETLWFKFGALLSEHQSNYKDVDDKFKTLSQRMSNELAKILHCLEDLGILCAYEAVKICHENFSKSEGVCEIYRKCYLQCITFLEEVIKLIKESLHLADKKILEVDFDYSLAEDLGYISPKLVELIKLFQSFGESSQVLCLIFVDRIITAKVIERFAKTVPHISHLTVSYLTGNNTSVDALAPKRQKEILDSFRSGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPKTVCSYVQSRGRSRQANSQFVVMLERGNLKQRDQLFDIIRSERSMTDASIYKDHKSSLRACTVGKTNAYYVESTGASVTLDSSVSLIHRYCGTLPRDKYSCVKPDFEFLPVEGGYQCKLILPSNSAFQTIIGPSGKDIRLAKHLACFEACKKLHQMGALNEHLVPLIEDSSEDDHIVKNKESSSGAGTTKRKELHGTANIRALRGVWRDKLDGAKFHAYKFEFTCNIVSEIYSGFALLIESKLEDDVGNTELDLYVVSKIVKASITSCGQVDLDAEKMMKAKCFHELFFNGLFGRLIFKSKSPGGKREFLLQKDTKSLWSPKYSYMLLPLEKLNDICKGSLQINWCGINSCPSAIEFVKRNFSLVTRDCDDNDTITSPHDTSSSEMECVGTNKIRFANCVVDADDIKDRVVLAIHTGKIYCIIEIDSNLSAESPFYGNNEKSKECITFSDYFSKSYGITLRHPGQPLLRLKQSHNPHNLLFNFHEEDARDKSSRISPAASKMPAHVHIPPELLYILDVKRDVLKSLYLLPSLMHRIESLMLSSQLRDEIDGETSKFNIRSSLILEALTTLRCSESFSMERLELLGDSVLKYVVSCHLFLKYPKKHEGQLSSRRSSAVCNSTLHKLGTDRKLQGYIRDSAFEPRRWVAPGQRSIHPVCCDCGLETLEVPLDVKFHTEDPKVVVGKFCDKGHRWMCSKTIADCVEALIGAYYVDGGLFASLNVMKWLGIGAELELSLVEEAITAASLHTCVPKESEIACLEKKIGYEFSVKGLLVEAITHLSEKELGIGCCYERLEFLGDSVLDLLITQHLYKSHTDIDPGVLTDLRSASVNNDNFAQVAVRHNFHQHLLHSSGLLLSQISEYVKVISESDPRSLPSIRAPKALGDVVESIVGAILIDTKLSLDQVWAVFYPLLSPIVTPDKLELPPLRELNELCDSLGYFVKVKENCEKMGPAMHVEVSVQLPNALLVREGKGATKKTAKGEAAFHLLKDLEKRGISHGSFMSKGKRDNPHHIYDSSHLKMDSSICSSLIEGHSSEPASHKTHTLDETNLTAISLSINMKKGGPRTTLYEVCKKLQWPVPAFDSTEYKDRSLFESCEELQRSKGQNCFVSKIILCIPNYGNIECKGEARSDKKASFDSAAVQMLIELQRLGKVEIDAPPPSS 1679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1698 1679 CDD RIBOc 1079 1243 IPR000999 GO:0004525|GO:0006396
Aed4g1698 1679 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 601 691 IPR005034 GO:0016891
Aed4g1698 1679 CDD DEXHc_dicer 64 262 - -
Aed4g1698 1679 CDD SF2_C_dicer 410 542 - -
Aed4g1698 1679 Pfam Type III restriction enzyme, res subunit 71 230 IPR006935 GO:0003677|GO:0005524|GO:0016787
Aed4g1698 1679 SMART ultradead3 62 261 IPR014001 -
Aed4g1698 1679 Pfam Ribonuclease III domain 1309 1415 IPR000999 GO:0004525|GO:0006396
Aed4g1698 1679 Pfam Ribonuclease III domain 1097 1232 IPR000999 GO:0004525|GO:0006396
Aed4g1698 1679 Gene3D - 1587 1666 - -
Aed4g1698 1679 Gene3D - 405 568 IPR027417 -
Aed4g1698 1679 PANTHER DICER-RELATED 46 1669 - -
Aed4g1698 1679 Gene3D Dicer dimerisation domain 596 694 IPR038248 -
Aed4g1698 1679 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 414 576 IPR001650 -
Aed4g1698 1679 SUPERFAMILY PAZ domain 921 1035 IPR036085 GO:0005515
Aed4g1698 1679 SUPERFAMILY RNase III domain-like 1272 1436 IPR036389 GO:0004525|GO:0006396
Aed4g1698 1679 Gene3D Ribonuclease III domain 1270 1438 IPR036389 GO:0004525|GO:0006396
Aed4g1698 1679 SMART riboneu5 1288 1439 IPR000999 GO:0004525|GO:0006396
Aed4g1698 1679 SMART riboneu5 1079 1252 IPR000999 GO:0004525|GO:0006396
Aed4g1698 1679 Pfam Dicer dimerisation domain 601 686 - -
Aed4g1698 1679 SMART PAZ_2_a_3 901 1059 IPR003100 GO:0005515
Aed4g1698 1679 ProSitePatterns Ribonuclease III family signature. 1309 1317 IPR000999 GO:0004525|GO:0006396
Aed4g1698 1679 SMART helicmild6 447 534 IPR001650 -
Aed4g1698 1679 Gene3D paz domain 908 1033 - -
Aed4g1698 1679 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 542 IPR027417 -
Aed4g1698 1679 Gene3D Ribonuclease III domain 1068 1243 IPR036389 GO:0004525|GO:0006396
Aed4g1698 1679 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1442 1510 IPR014720 -
Aed4g1698 1679 MobiDBLite consensus disorder prediction 49 64 - -
Aed4g1698 1679 ProSiteProfiles Ribonuclease III family domain profile. 1273 1416 IPR000999 GO:0004525|GO:0006396
Aed4g1698 1679 SUPERFAMILY RNase III domain-like 1073 1249 IPR036389 GO:0004525|GO:0006396
Aed4g1698 1679 Gene3D - 61 296 IPR027417 -
Aed4g1698 1679 Pfam PAZ domain 920 1055 IPR003100 GO:0005515
Aed4g1698 1679 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 73 248 IPR014001 -
Aed4g1698 1679 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 46 1669 - -
Aed4g1698 1679 CDD RIBOc 1289 1437 IPR000999 GO:0004525|GO:0006396
Aed4g1698 1679 Gene3D - 1442 1511 - -
Aed4g1698 1679 MobiDBLite consensus disorder prediction 1 64 - -
Aed4g1698 1679 ProSiteProfiles PAZ domain profile. 921 1035 IPR003100 GO:0005515
Aed4g1698 1679 ProSiteProfiles Ribonuclease III family domain profile. 1060 1232 IPR000999 GO:0004525|GO:0006396
Aed4g1698 1679 Pfam Helicase conserved C-terminal domain 427 531 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1698 Aed-Chr4 21425574 21443023 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1698 432 531 Eukaryotic Initiation Factors Gene Family AT3G19760 34.951 6.94e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1698 K11592 - gmx:100806831 3041.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1698 4 21425574 21443023 Aed4g1698 4 21425574 21443023 ECH