Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1688 ATGGCGTTTTGGATTGGATTCCTCCTCCTTCCGGTTTTTCTCCTTTGCTTGGACTCAGCAGTAGGTTCGGTGGTGAATTCACACGACGGAGAAGCGTTGTTGGAGATAAAGAACTCGTTCAGGGACGTGGACAACGTTCTCTATGACTGGACGGACTCACCCTCTTCTTCAGATTATTGTGTTTGGAAAGGGGTTACGTGTGATAATGTCACTTTCAACGTCGTTGCACTAAATCTTTCAGGGTTGAATCTTGATGGTGAAATTTCACCTGCAATAGGGAGACTCAAAAGCCTGGTCTCGATTGATTTCAAGGAAAACCATTTATCTGGCCAGATACCCGACGAGCTTGGTGATTGTTCCTCTTTGAATAGCATAGACTTGTCCTTTAATGAGATTCGGGGAGATATACCGTTTGCAGTTTCGAAGATGAAACAGCTGGAAAATCTCATTTTGAAAAATAACCAGCTAATTGGACCAATTCCTTCAACTCTCTCTCAGATTCCTAACTTGAAGATTCTAGACCTGGCACAGAATAATCTTAGCGGGGAGATACCAAGACTTATATACTGGAATGAAGTTTTGCAATACATTGGCTTGCGGAGTAACAATTTGGAGGGTTCACTTTCTCCAGACATGTGCCAGTTAACAGGAGTGTGGTATTTTGATGTGAGAAACAATAGCTTGACGGGCAGTATTCCTGAAAACATAGGCAATTGTACTACTTTCGGGGTCTTTAATCTCAGGGATTTATCCTACAACAAGTTTACCGGAGAGATACCATACAATATTGGGTTTCTGCAAGTAGCAACTCTGAAGCTCATTTTAAACTTGTTTGAGCTTGGTAGGTCATTGCAAGGCAATAAACTCTCAGGGCATATTCCATCAGTGATCGGTCTGATGCAAGCGCTTACTGTCTTAGATTTGAGTTGTAACTTGTTAAGTGGACCAATCCCTCCTATCCTGGGAAATTTGAGCTTCACGGAAAAATTGTATTTGCATGGAAACAAGCTGACTGGTCTCATTCCCCCAGAGCTTGGAAATATGACAGGGCTTCACTATTTGGAATTGAATGACAACCATTTAAGTGGACATATTCCACCTGAGCTTGGAAAGCTTACTGATTTGTTTGACTTAAATGTCGCCAACAACAACCTTGAAGGTCCAATTCCTGATAATCTAAGCTCGTGTAAAAACCTCAACAGCCTCAATGTGCATGGGAATAAGCTGAGTGGAACAGTCCCCACAGCTTTTCACAGCTTAGAGAGTATGACCTATATGAATCTTTCTTCAAACAATCTTCAAGGCCCCATTCCAATTGAACTTTCACGGATTGGCAATTTAGATACACTGGATATATCAAATAATAATATAATTGGTTCCATTCCTTCTACGATTGGTGACTTGGAACATCTTCTGAAGTTGAATCTGAGCAGAAATCATTTAACAGGGTTTATTCCAGCAGAATTTGGTAATCTAAGAAGTGTCATGGATATGAGACTAGAAAAGAACAAATTGTCTGGGGATGTGTCTTCGCTTGTAAATTGCCTTAGTCTTTCTCTACTTAATGTCTCTTATAATAACCTAGTTGGTGTTATTCCCACCAACAAGAATTTTTCCAGGTTTTCCCCTGACAGTTTTCTTGGAAATCCTGGTCTTTGTGGCGATTGGCTGGATTCATCTTGTCATAAGTCTCACCCTACAGAACGAGTTACCTTGTCCAAGGCAGCTATCCTAGGAATTGCTATAGGCGCCCTTGTGATTCTTTTTATGATATTGCTAGCAGCTTGCCGACCACACAATCCAACTTCTTTCTCTGATGGATCTTTTGACAAACCAGTTAATTACTCACCTCCGAAGCTAGTGATTCTTCACATGAATATGGCACTTCATGTGTATGATGATATCATGAGGATGACTGAAAACCTAAATGAGAAGTATATAATTGGGTATGGTGCTTCGAGTACAGTTTATAAATGTGTTCTTAAGAATTGCAAGCCAGTGGCTATCAAGAAGCTCTATTCCCACTATCCACAATACTTGAAAGAGTTTGAGACTGAGCTTGAGACAGTTGGCAGCATTAAGCACAGGAATCTGGTCAGTCTCCAAGGCTACTCTTTGTCTCCATATGGAAATCTTCTCTTTTATGACTACATGGAAAATGGCAGCCTATGGGACCTTCTGCATGGACCTACCAAGAAGAAGAAGCTTGATTGGGATCTTCGTGTAAAAATAGCACTTGGATCAGCACAAGGGCTTGCTTATCTACACCACGATTGCAGTCCACGGATCATTCACAGGGATGTGAAATCATCTAATATTTTACTAGACAAAGACTTTGAGCCCCATCTAACTGATTTTGGCATTGCAAAAAGTCTATGCCCCTCTAAGACCCACACTTCAACTTACGTTATGGGCACAATTGGGTACATAGACCCCGAGTATGCTAGAACTTCCCGCCTCACTGAGAAGTCTGATGTATATAGCTATGGTATTGTATTGCTTGAGCTTCTAACTGGGAGGAAAGCTGTTGACAACGAATCAAACCTCCATCATCTGATATTGTCCAAGACAGCTAATGATGGCGTAATGGAAACCGTTGATCCAGATATTAGTGCAACATGCAAGGACATGGGAGCAGTGAAAAAGGTATTTCAGCTTGCTCTTTTATGCACAAAGAAGCAACCAGTTGATAGGCCTACAATGCATGAAGTGACTCGCGTGCTGGGGAGCCTTGTGCAATTCACTCCACCAAAACAAACTGACCCAACACAATTACATGATTCACAGTTACCATCTGCTGCTAAAATGCAATGTTACAAGGATGAATATGCAAATCTTAAAACTCCACACTTGGTTAACTGTCCTTCCATGAGCACTTCTGATGCCCAACTCTTCCTCAAATTTGGAGAAGTGATATCACAAAACAGCCACTGA 2934 0.4138 MAFWIGFLLLPVFLLCLDSAVGSVVNSHDGEALLEIKNSFRDVDNVLYDWTDSPSSSDYCVWKGVTCDNVTFNVVALNLSGLNLDGEISPAIGRLKSLVSIDFKENHLSGQIPDELGDCSSLNSIDLSFNEIRGDIPFAVSKMKQLENLILKNNQLIGPIPSTLSQIPNLKILDLAQNNLSGEIPRLIYWNEVLQYIGLRSNNLEGSLSPDMCQLTGVWYFDVRNNSLTGSIPENIGNCTTFGVFNLRDLSYNKFTGEIPYNIGFLQVATLKLILNLFELGRSLQGNKLSGHIPSVIGLMQALTVLDLSCNLLSGPIPPILGNLSFTEKLYLHGNKLTGLIPPELGNMTGLHYLELNDNHLSGHIPPELGKLTDLFDLNVANNNLEGPIPDNLSSCKNLNSLNVHGNKLSGTVPTAFHSLESMTYMNLSSNNLQGPIPIELSRIGNLDTLDISNNNIIGSIPSTIGDLEHLLKLNLSRNHLTGFIPAEFGNLRSVMDMRLEKNKLSGDVSSLVNCLSLSLLNVSYNNLVGVIPTNKNFSRFSPDSFLGNPGLCGDWLDSSCHKSHPTERVTLSKAAILGIAIGALVILFMILLAACRPHNPTSFSDGSFDKPVNYSPPKLVILHMNMALHVYDDIMRMTENLNEKYIIGYGASSTVYKCVLKNCKPVAIKKLYSHYPQYLKEFETELETVGSIKHRNLVSLQGYSLSPYGNLLFYDYMENGSLWDLLHGPTKKKKLDWDLRVKIALGSAQGLAYLHHDCSPRIIHRDVKSSNILLDKDFEPHLTDFGIAKSLCPSKTHTSTYVMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNESNLHHLILSKTANDGVMETVDPDISATCKDMGAVKKVFQLALLCTKKQPVDRPTMHEVTRVLGSLVQFTPPKQTDPTQLHDSQLPSAAKMQCYKDEYANLKTPHLVNCPSMSTSDAQLFLKFGEVISQNSH 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1688 977 Gene3D Ribonuclease Inhibitor 190 272 IPR032675 -
Aed4g1688 977 Pfam Leucine Rich Repeat 471 492 IPR001611 GO:0005515
Aed4g1688 977 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 12 964 - -
Aed4g1688 977 Gene3D Ribonuclease Inhibitor 26 189 IPR032675 -
Aed4g1688 977 SUPERFAMILY L domain-like 283 554 - -
Aed4g1688 977 Gene3D Phosphorylase Kinase; domain 1 624 717 - -
Aed4g1688 977 ProSiteProfiles Leucine-rich repeat profile. 169 191 IPR001611 GO:0005515
Aed4g1688 977 ProSitePatterns Serine/Threonine protein kinases active-site signature. 763 775 IPR008271 GO:0004672|GO:0006468
Aed4g1688 977 SMART serkin_6 642 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g1688 977 Pfam Leucine rich repeat N-terminal domain 27 68 IPR013210 -
Aed4g1688 977 SMART LRR_typ_2 167 191 IPR003591 -
Aed4g1688 977 SMART LRR_typ_2 468 491 IPR003591 -
Aed4g1688 977 SMART LRR_typ_2 95 119 IPR003591 -
Aed4g1688 977 SMART LRR_typ_2 348 372 IPR003591 -
Aed4g1688 977 SMART LRR_typ_2 300 324 IPR003591 -
Aed4g1688 977 SMART LRR_typ_2 215 239 IPR003591 -
Aed4g1688 977 SUPERFAMILY L domain-like 26 266 - -
Aed4g1688 977 Gene3D Transferase(Phosphotransferase) domain 1 718 928 - -
Aed4g1688 977 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 12 964 - -
Aed4g1688 977 ProSiteProfiles Protein kinase domain profile. 642 915 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g1688 977 ProSitePatterns Protein kinases ATP-binding region signature. 648 671 IPR017441 GO:0005524
Aed4g1688 977 SUPERFAMILY Protein kinase-like (PK-like) 619 908 IPR011009 -
Aed4g1688 977 Pfam Leucine rich repeat 398 457 IPR001611 GO:0005515
Aed4g1688 977 Gene3D Ribonuclease Inhibitor 273 565 IPR032675 -
Aed4g1688 977 Pfam Protein kinase domain 644 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1688 Aed-Chr4 21351173 21358506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1688 97 976 Receptor kinase-like Gene Family AT5G07180 61.989 0.0 1094
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Aed4g1688 Pkinase 1.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1688 K20718 - gmx:100804875 1708.73