Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1687 ATGGCTACTCATCTCTTCAGACTTTCTCCGTCCTCGCTACCGAATCTCTGTTTCAATTACACGCCCAACCATGCTGTTCACTTCATTTCTCCGTTGCCGCCAAAACGACGTCGCAGCCGCAGCCGTCACCGCGTTGAAATTCTCCGCCCACCGTTCGCCGTTTCGAACTCCTTCGGGACCGAGACTGGCTCGCCGGAATCGGCTATCCTCCAAGCCCGGAGAGAGGCCAAAGACTCGCCGGTTCTGCTCGACGTCACCGGAATGATGTGCGGAGCGTGCGTGTCCCGAGTCAAGAACATCCTCTCCGCTGACGACCGAGTCGACTCGGTCGTGGTCAACATGTTGACTGAGACCGCTGCCGTTAAGCTGCGGCGGATCCAGGAGGAACCGTTGAGCGTCGCGCAGAGCCTCGCTCGGAGACTGAGCGACTGCGGATTTCCGACGAAGCGGAGGACGTCGAGTTCGGGAGTGACGGAAAACGTGAGGAAGTGGAAGGAGATGGTGAAGAAGAAGGAGGAATTGGTCGCTAAGAGTCGAAGTCGCGTCACGTTCGCTTGGACATTGGTTGCATTGTGCTGTGGATCGCACGCTTCGCATATTTTCCACTCCTTGGGGATTCACATTTCTCATGGACCCCTTATGCAGATTCTTCATAGTTCATACTTGAAGGGTGGTTTAGCTTTGGGGGCTCTATTGGGACCAGGACGAGACTTACTCTTTGATGGCCTAAACGCATTTAAGAAGGGGTCGCCTAATATGAACTCTCTCGTGGGATTTGGTTCTGTAGCTGCATTCATCATTAGTTCGATCTCATTACTTAACCCTGGCCTGGCATGGGATGCATCATTCTTTGATGAACCGGTTGTTTCTTGTCCTTGTGCACTGGGTCTTGCTACGCCCACAGCAATCTTGGTTGGCACCTCACTTGGAGCAAGAAAAGGACTTCTTATTAGGGGAGGGGATGTGCTGGAACGCTTGGCTGGAATAAATTATATTGCTCTAGACAAGACAGGAACCCTGACCAAAGGAAAACCAGTTGTGTCGGGCATAAGCTCTATCCTTTATGGAGAATCTGAAATTCTTCGGCTTGCTGCTGCAGTGGAGAAAACTGCATCTCACCCAATAGCAAAGGCTATTGTCAATAAAGCTGAGTCAGTAGAGTTGATCCTTCCCATGACAAAGGGACAGTTAGTTGAACCAGGTTTTGGAACTTTAGCAGAAGTTGATGGGCACCTGATTGCGGTTGGGTCTTTAGAATGGGTTCATGAGCGCTTCCAGACAAGAGCGAACCCGTCTGATTTGACAAATCTGGAACATAGTTTGATGAATCATTCATTGAATACAACATCTTCAAAGTATTCGAAAACTGTTGTCTATGTTGGACGTGAAGGAGAAGGCATCATTGGTGCTATTGCCATATCTGACACTGTGCGTGAAGATGCTGAATCTACTATAACGAGGCTCAAGCAGAAGGGGATTAAAACAATCCTCTTGTCAGGAGACAGGGAAGAGGCAGTTGCAACAGTAGCAGACACAGTTGGAATTGAAAATGATTTTGTCAAAGCATCTTTGTCTCCTCAACAGAAATCTGAATTTATTTCCTCTCTGAAAGCTTCCGGACATCATGTTGCAATGGTAGGTGATGGGATAAACGATGCACCCTCTTTGGCTGTAGCTGATGTTGGGATTGCTCTGCAGAATGAAGCTCAAGAAAATGCTGCCTCGGATGCAGCATCTATCATACTTCTGGGGAACAAAATTTCACAAGTTGTGGATGCTCTAGACCTAGCACAGGCAACAATGGGAAAAGTGTACCAAAATTTGTCTTGGGCGGTAGCATATAATGTTGTTGCCATTCCCATTGCTGCTGGTGCGTTACTTCCCCAATTTGACTTTGCTATGACACCGTCACTTTCAGGAGGACTGATGGCTCTGAGCTCCATCTTCGTTGTTGGCAACTCACTCCTTCTACAGCTTCATGGCCATGGGTCTCAGATCTCTAGAAAGGTTGGGCCAAATCTAGAAAGCATATCTTCCCATTCGAACACAGATATGCTTAATGTCAAATAA 2070 0.4836 MATHLFRLSPSSLPNLCFNYTPNHAVHFISPLPPKRRRSRSRHRVEILRPPFAVSNSFGTETGSPESAILQARREAKDSPVLLDVTGMMCGACVSRVKNILSADDRVDSVVVNMLTETAAVKLRRIQEEPLSVAQSLARRLSDCGFPTKRRTSSSGVTENVRKWKEMVKKKEELVAKSRSRVTFAWTLVALCCGSHASHIFHSLGIHISHGPLMQILHSSYLKGGLALGALLGPGRDLLFDGLNAFKKGSPNMNSLVGFGSVAAFIISSISLLNPGLAWDASFFDEPVVSCPCALGLATPTAILVGTSLGARKGLLIRGGDVLERLAGINYIALDKTGTLTKGKPVVSGISSILYGESEILRLAAAVEKTASHPIAKAIVNKAESVELILPMTKGQLVEPGFGTLAEVDGHLIAVGSLEWVHERFQTRANPSDLTNLEHSLMNHSLNTTSSKYSKTVVYVGREGEGIIGAIAISDTVREDAESTITRLKQKGIKTILLSGDREEAVATVADTVGIENDFVKASLSPQQKSEFISSLKASGHHVAMVGDGINDAPSLAVADVGIALQNEAQENAASDAASIILLGNKISQVVDALDLAQATMGKVYQNLSWAVAYNVVAIPIAAGALLPQFDFAMTPSLSGGLMALSSIFVVGNSLLLQLHGHGSQISRKVGPNLESISSHSNTDMLNVK 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1687 689 PRINTS P-type cation-transporting ATPase superfamily signature 491 501 - -
Aed4g1687 689 PRINTS P-type cation-transporting ATPase superfamily signature 333 347 - -
Aed4g1687 689 PRINTS P-type cation-transporting ATPase superfamily signature 546 565 - -
Aed4g1687 689 PRINTS P-type cation-transporting ATPase superfamily signature 469 480 - -
Aed4g1687 689 Pfam Heavy-metal-associated domain 83 146 IPR006121 GO:0046872
Aed4g1687 689 Gene3D - 344 477 IPR023299 GO:0000166
Aed4g1687 689 PANTHER ATP7, ISOFORM B 79 288 - -
Aed4g1687 689 PANTHER ATP7, ISOFORM B 288 659 - -
Aed4g1687 689 SFLD p-type atpase 316 599 IPR044492 -
Aed4g1687 689 SUPERFAMILY HMA, heavy metal-associated domain 81 124 IPR036163 GO:0046872
Aed4g1687 689 CDD HMA 83 147 IPR006121 GO:0046872
Aed4g1687 689 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 280 638 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aed4g1687 689 Gene3D - 73 153 - -
Aed4g1687 689 SUPERFAMILY HAD-like 331 654 IPR036412 -
Aed4g1687 689 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 335 424 IPR023299 GO:0000166
Aed4g1687 689 ProSitePatterns E1-E2 ATPases phosphorylation site. 335 341 IPR018303 -
Aed4g1687 689 SFLD Haloacid Dehalogenase 316 599 - -
Aed4g1687 689 Gene3D - 324 597 IPR023214 -
Aed4g1687 689 ProSiteProfiles Heavy-metal-associated domain profile. 80 150 IPR006121 GO:0046872
Aed4g1687 689 Pfam haloacid dehalogenase-like hydrolase 329 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1687 Aed-Chr4 21337777 21346706 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1687 288 658 Primary Pumps ATPases AT1G63440 40.106 4.31e-67 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1687 K17686 - gmx:100127402 719.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1687 4 21337777 21346706 Aed4g1687 4 21337777 21346706 ECH