Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1678 ATGGATGTTAATAATAAGCAGCAGCAGCAAGGTCTGAATGGGGGTGAAGTAGTAATCATGGCTGAGAGGAAAAGGGAAGTGACGGTGGCGATTCCAAATGAGGGTGGCGCTGAATCTTTGATGCCAAAGCAACAGACCAGGGTGAATTCGCCACACAGAATATTAAACGACAACGAGGTTGTTGCTGTTGCAGCAAAGTCGCCACCTTTGCACTGTGCTTCCCCTGAGATAAGGTTCATGCCAAGCCCAAACAAGCCCCCAAAAGTTCCCACTTCCAATGCGAATCTCACTCTCACTCGGCGAAAATCACTCACCAGGTCAGTGTATTCCAAACCCAAATCAAGGTTTGGTGAACAACCTTACCCCATTGATGGGACCCTTTTTGAAGAGAATGCAACCTCAACTTTGCAAGAAAATTTGACTGTTGGTTCACCATTTAAAGCATCACCTAATAACAGCAAACCTGGGACTGTTAATAGAACTTTCTCCATACTTTCTGTGATCACTCCCAAGACGCCGTTGATGGCGTCTCCCGGGCCGGCCGGTGAGAGTGAGGATTTCGATGAAATCATTTACAAGAAAGTTGAATTGAGTAAAAGCAAGCGTAGTAGGAGAGTGACTACTAAGGTATTGTTTGAATGGTTTGTGTTTGTGTGCATTGCAAGTAGCTTGGTGGCTGGTTTAACTGTTGGAAAACTTAAACGGACCGAGATTTGGGGTTTGGGGTTTTGGAGGTGGTGTGTGCTTGTGATGGCGACCTTTTGTGGCATGTTGGTTACCAGATGGTTTATGCACATAGTTGTTTTCTTGATTGAGACCAACTTTTTGTTAAGGAAAAAGGTGTTGTATTTTGTCCATGGACTGAAGAAGTGTGTCCAGTTCTTCATTTGGCTTAGTTTGGTTCTTCTCACATGGGTGCTGTTGATTAACCGCGGGGTCCGCCGGACTGAATTGGCGTTAAAGATTTTGAATGGTGTAACATGGACTCTTGTTTCCCTCCTCATTGGAGCATTCCTGTGGTTTGTGAAGACACTGTTGTTGAAGATCTTGGCGTCGAATTTCCACGTTAAGTCTTTCTTTGATCGAATTCAAGAATCACTCTTCCATCAGTACATTCTGCAGACTCTCTCCGGGCATCCACTGGTAGAAGAGGCCGAGAAAGTTGGGGCATCGTACAGTGTTGGCCGTTTCAGTTTCAGGAGTACGGATGGTAAAGGCGGCACAAAGAAAGAGACTATTGATATCGCAAAGCTTCACCAGATGAAACAAGAGAAGGTTTCTGCTTGGACTATGAAGGTTTTGGTTGATGCAATGACAAATTCAGGGCTGTCCACAATCTCTAGTGCACTAGAGGAAAGTTTTGATGATGCAGAAAATGAACAGACTGATAAAGAGATTACTAATGAGATGGAAGCAACTGCTGCAGCCTATTACATTTTCAGGAATGTTGCTGCCCATGGTTGCACGTACATTGATGATGATGAACTTCGGAGGTTCATGATTAAGGAAGAAGTGCGAATAGTATATCCCCTACTGGCTGAAGCAGAAACGGGGCAAATTACTAGAAAGTCCTTAACAGACTGGTTGTTGAAGGTATATCAAGAACGCAGAGCATTAGCACATGCCTTAAGTGACACCAAAACAGCCGTAAAACAACTAAACAAGCTCGTGACAGTACTCCTAGTAGTGGTGACCATAATTGTGTGGCTTCTACTAATGGAGATTGCTACAACAAAAGTACTTGTATTCCTCTCATCACAGCTAGTACTTGCAGCTTTCATGTTCGGAAACACATGCAAGAACATATTTGAAGCTATCATCTTTGTGTTTGTAATGCATCCATTTGACGTTGGTGATCGATGTGTTATTGATGGCGTTGAGCTATTGGTTGAAGAAATGAATATATTGACAACAGTCTTCTTGAAGCTTAATAATGAAAAGGTGTACTATCCAAACTCTGTCCTGGCTACAAAACCAATTAGCAATTATTACAGAAGCCCAGATATGGGTGACCGCGTAGATTTCTCGATTGATTTTATGACACCAGCTGAGAAGATTGGAGCACTGAAAGAAAAGATAAAGAGGTACATGGATAGAAATCCACAATACTGGCATCCCAATCATGGCTTAGTAGTGAAGGAGATTGAAGATGTAAACAAGATTAAGATGGGTCTCAATGTTACCCACACAATGAACTTTCAAGAGTTTGGGGAGAAAAACAAGCGAAGAACTGAACTGGTAATGGAATTAAAGAAAATATTTGAAGAGCTCAATATCAGATACAACCTTCTTCCTCAAGGAGTTCATGTCAGACATATGGAACCGGACCCGAGGGTGCTCAATATATGA 2349 0.427 MDVNNKQQQQGLNGGEVVIMAERKREVTVAIPNEGGAESLMPKQQTRVNSPHRILNDNEVVAVAAKSPPLHCASPEIRFMPSPNKPPKVPTSNANLTLTRRKSLTRSVYSKPKSRFGEQPYPIDGTLFEENATSTLQENLTVGSPFKASPNNSKPGTVNRTFSILSVITPKTPLMASPGPAGESEDFDEIIYKKVELSKSKRSRRVTTKVLFEWFVFVCIASSLVAGLTVGKLKRTEIWGLGFWRWCVLVMATFCGMLVTRWFMHIVVFLIETNFLLRKKVLYFVHGLKKCVQFFIWLSLVLLTWVLLINRGVRRTELALKILNGVTWTLVSLLIGAFLWFVKTLLLKILASNFHVKSFFDRIQESLFHQYILQTLSGHPLVEEAEKVGASYSVGRFSFRSTDGKGGTKKETIDIAKLHQMKQEKVSAWTMKVLVDAMTNSGLSTISSALEESFDDAENEQTDKEITNEMEATAAAYYIFRNVAAHGCTYIDDDELRRFMIKEEVRIVYPLLAEAETGQITRKSLTDWLLKVYQERRALAHALSDTKTAVKQLNKLVTVLLVVVTIIVWLLLMEIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVIDGVELLVEEMNILTTVFLKLNNEKVYYPNSVLATKPISNYYRSPDMGDRVDFSIDFMTPAEKIGALKEKIKRYMDRNPQYWHPNHGLVVKEIEDVNKIKMGLNVTHTMNFQEFGEKNKRRTELVMELKKIFEELNIRYNLLPQGVHVRHMEPDPRVLNI 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1678 782 SUPERFAMILY Sm-like ribonucleoproteins 604 663 IPR010920 -
Aed4g1678 782 PIRSF Memb_At2g17000 2 780 IPR016688 -
Aed4g1678 782 Pfam Mechanosensitive ion channel 554 760 IPR006685 GO:0016020|GO:0055085
Aed4g1678 782 Gene3D - 614 663 IPR023408 -
Aed4g1678 782 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 9 25 770 - -
Aed4g1678 782 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 25 770 IPR016688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1678 Aed-Chr4 21292965 21296048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1678 65 770 Mechanosensitive Ion Channel Family AT5G12080 58.592 0.0 833
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1678 K22048 - gmx:100803107 1365.9